FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8762, 210 aa
  1>>>pF1KB8762 210 - 210 aa - 210 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0841+/-0.000718; mu= 2.7702+/- 0.044
 mean_var=163.5175+/-33.207, 0's: 0 Z-trim(116.1): 7  B-trim: 419 in 1/51
 Lambda= 0.100298
 statistics sampled from 16636 (16642) to 16636 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.511), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS8099.1 CDC42EP2 gene_id:10435|Hs108|chr11      ( 210) 1428 217.2 5.9e-57
CCDS1791.1 CDC42EP3 gene_id:10602|Hs108|chr2       ( 254)  444 74.9   5e-14


>>CCDS8099.1 CDC42EP2 gene_id:10435|Hs108|chr11           (210 aa)
 initn: 1428 init1: 1428 opt: 1428  Z-score: 1136.0  bits: 217.2 E(32554): 5.9e-57
Smith-Waterman score: 1428; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB8 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KFHLLPGTMVEGPEEDGTFDLPFQFTRTATVCGRELPDGPSPLLKNAISLPVIGGPQALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KFHLLPGTMVEGPEEDGTFDLPFQFTRTATVCGRELPDGPSPLLKNAISLPVIGGPQALT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LPTAQAPPKPPRLHLETPQPSPQEGGSVDIWRIPETGSPNSGLTPESGAEEPFLSNASSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LPTAQAPPKPPRLHLETPQPSPQEGGSVDIWRIPETGSPNSGLTPESGAEEPFLSNASSL
              130       140       150       160       170       180

              190       200       210
pF1KB8 LSLHVDLGPSILDDVLQIMDQDLDSMQIPT
       ::::::::::::::::::::::::::::::
CCDS80 LSLHVDLGPSILDDVLQIMDQDLDSMQIPT
              190       200       210

>>CCDS1791.1 CDC42EP3 gene_id:10602|Hs108|chr2            (254 aa)
 initn: 540 init1: 293 opt: 444  Z-score: 365.3  bits: 74.9 E(32554): 5e-14
Smith-Waterman score: 450; 42.9% identity (59.6% similar) in 245 aa overlap (1-192:1-243)

               10         20        30        40        50         
pF1KB8 MSTKVPIYLKRGS-RKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQ
       : .:.::::: .. .:::: ::::.:: :::::::::::::::::. :  :.::::::::
CCDS17 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 GKFHLLPGTMVEGPEEDGTFDLPFQFTRTATVCGRELPDGPSPLLKNAISLPVIGGPQAL
       :...::::.. ..  . : :    .: :. ..    . . :::.::::::::.::: :::
CCDS17 GNYELLPGNQEKA--HLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQAL
               70          80        90       100       110        

     120                  130              140          150        
pF1KB8 TLP--------TAQ---APPKPPRLHLET-------PQPSPQEGGSV---DI-WRIPETG
        ::        . :   .: : :::  :         . :  :.:.:   :  :    ..
CCDS17 MLPLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSA
      120       130       140       150       160       170        

       160                  170                          180       
pF1KB8 SPNS--------GLT---PESGAEEPF------------------LSNAS-SLLSLHVDL
       : .:        .:.   :.  ::. :                  ::. . :::::..::
CCDS17 SQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDL
      180       190       200       210       220       230        

       190       200       210
pF1KB8 GPSILDDVLQIMDQDLDSMQIPT
       :::.:                  
CCDS17 GPSLLDEVLNVMDKNK       
      240       250           




210 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:22:19 2016 done: Fri Nov  4 15:22:19 2016
 Total Scan time:  2.570 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]