FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8760, 203 aa
  1>>>pF1KB8760 203 - 203 aa - 203 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7267+/-0.000695; mu= 13.1710+/- 0.042
 mean_var=112.3069+/-23.172, 0's: 0 Z-trim(114.1): 52  B-trim: 358 in 1/50
 Lambda= 0.121024
 statistics sampled from 14601 (14659) to 14601 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.45), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS11978.1 RNF152 gene_id:220441|Hs108|chr18      ( 203) 1416 256.9 6.1e-69


>>CCDS11978.1 RNF152 gene_id:220441|Hs108|chr18           (203 aa)
 initn: 1416 init1: 1416 opt: 1416  Z-score: 1351.2  bits: 256.9 E(32554): 6.1e-69
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
              130       140       150       160       170       180

              190       200   
pF1KB8 FLLGIVLHNMSCISKRFTVISCG
       :::::::::::::::::::::::
CCDS11 FLLGIVLHNMSCISKRFTVISCG
              190       200   




203 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:21:17 2016 done: Fri Nov  4 15:21:18 2016
 Total Scan time:  2.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]