Result of FASTA (ccds) for
pF1KB8756
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8756, 200 aa
1>>>pF1KB8756 200 - 200 aa - 200 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4144+/-0.000982; mu= 13.0334+/- 0.060
mean_var=83.8257+/-17.765, 0's: 0 Z-trim(106.2): 179 B-trim: 737 in 2/48
Lambda= 0.140083
statistics sampled from 8654 (8860) to 8654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.272), width: 16
Scan time: 1.800
The best scores are: opt bits E(32554)
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 1305 273.3 7e-74
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 921 195.7 1.5e-50
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 921 195.7 1.6e-50
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 819 175.1 2.6e-44
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 515 113.6 7.4e-26
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 505 111.6 3e-25
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 504 111.4 3.4e-25
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 499 110.4 7e-25
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 498 110.2 8e-25
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 495 109.6 1.3e-24
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 453 101.1 4.4e-22
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 442 99.3 4.9e-21
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 427 95.8 1.7e-20
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 426 95.6 1.9e-20
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 413 93.0 1.3e-19
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 410 92.8 4.3e-19
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 401 90.6 6.4e-19
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 387 87.8 4.6e-18
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 388 88.3 9.1e-18
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 364 83.1 1.2e-16
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 358 81.9 2.6e-16
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 348 79.9 1.2e-15
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 339 78.0 3.1e-15
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 331 76.4 1.2e-14
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 325 75.2 2.7e-14
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 315 73.2 1.1e-13
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 297 69.9 2.6e-12
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 289 68.0 5.2e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 284 66.9 7.4e-12
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 280 66.0 1.2e-11
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 275 65.0 2.5e-11
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 276 65.3 2.8e-11
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 273 64.7 4.3e-11
>>CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 (200 aa)
initn: 1305 init1: 1305 opt: 1305 Z-score: 1439.9 bits: 273.3 E(32554): 7e-74
Smith-Waterman score: 1305; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
130 140 150 160 170 180
190 200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
::::::::::::::::::::
CCDS53 KLHDMIIKRRKMLRQQKKKR
190 200
>>CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 (192 aa)
initn: 918 init1: 918 opt: 921 Z-score: 1020.8 bits: 195.7 E(32554): 1.5e-50
Smith-Waterman score: 921; 69.5% identity (91.6% similar) in 190 aa overlap (10-199:3-192)
10 20 30 40 50 60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
.: ::. .:::.:::.:::: ::::::::::.:::::::::: ::::::::
CCDS25 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIK
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
.. :..: .. ::::::::::::::::::.::::::..:::::::.:.:::::::::.:.
CCDS25 LSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
..::::.:.:..:::::: .:: ..:::: ::. :: .: .:.::.:::::.:: ::..
CCDS25 FAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMD
120 130 140 150 160 170
190 200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
::..::.:::: :.:.::.
CCDS25 KLYEMILKRRKSLKQKKKR
180 190
>>CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 (201 aa)
initn: 918 init1: 918 opt: 921 Z-score: 1020.5 bits: 195.7 E(32554): 1.6e-50
Smith-Waterman score: 921; 69.5% identity (91.6% similar) in 190 aa overlap (10-199:3-192)
10 20 30 40 50 60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
.: ::. .:::.:::.:::: ::::::::::.:::::::::: ::::::::
CCDS63 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIK
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
.. :..: .. ::::::::::::::::::.::::::..:::::::.:.:::::::::.:.
CCDS63 LSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
..::::.:.:..:::::: .:: ..:::: ::. :: .: .:.::.:::::.:: ::..
CCDS63 FAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMD
120 130 140 150 160 170
190 200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
::..::.:::: :.:.::.
CCDS63 KLYEMILKRRKSLKQKKKRTGDLRSCEV
180 190 200
>>CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 (201 aa)
initn: 818 init1: 800 opt: 819 Z-score: 909.1 bits: 175.1 E(32554): 2.6e-44
Smith-Waterman score: 819; 60.2% identity (86.1% similar) in 201 aa overlap (1-200:1-201)
10 20 30 40 50
pF1KB8 MGNGLSDQTSILSN-LPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKI
::: :.... :. :: ::..:.:..::: ::::..::::.:.:::..:::::::::::
CCDS11 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 KVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKIT
.: ::.:. .::. :::::::::::::.:::: :::.:::::....::.::::.:::.:.
CCDS11 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 RISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGL
: :.:::::::..::::: ..:: .:.:: ::. ::...: :.: :. : ::..::
CCDS11 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
130 140 150 160 170 180
180 190 200
pF1KB8 EKLHDMIIKRRKMLRQQKKKR
:.:..::.::.: : ::.:
CCDS11 ERLYEMILKRKKAARGGKKRR
190 200
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 475 init1: 266 opt: 515 Z-score: 577.7 bits: 113.6 E(32554): 7.4e-26
Smith-Waterman score: 515; 44.2% identity (74.6% similar) in 181 aa overlap (9-189:6-180)
10 20 30 40 50 60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
.:..: : . ....:...::: :::::.::.:...:.:.:.:: :::.: ..
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
:.. : ::::::...::::: : . :.:..::::: : ::..:. ::.:.
CCDS28 Y-----KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
..: . . .:. :::::: :....::. :.. : . : :..: ::: : :: :::.
CCDS28 VDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRT-WYVQATCATQGTGLYEGLD
120 130 140 150 160 170
190 200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
: . . ::
CCDS28 WLSNELSKR
180
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 462 init1: 274 opt: 505 Z-score: 566.7 bits: 111.6 E(32554): 3e-25
Smith-Waterman score: 505; 42.1% identity (73.7% similar) in 190 aa overlap (1-190:1-181)
10 20 30 40 50 60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
::: ... .:..: . . ..:...::: :::::.::.:...:.:.:.:: :::.: ..
CCDS87 MGNIFGN---LLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
:...: ::::::.:.::::. : . :.:..::::: : ::..::. :: ..
CCDS87 Y-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
.: . . .:. :::::: :... .:: :.. : . :..: ::: :::: :::.
CCDS87 EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLD
120 130 140 150 160 170
190 200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
: ... ...
CCDS87 WLANQLKNKK
180
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 472 init1: 268 opt: 504 Z-score: 565.8 bits: 111.4 E(32554): 3.4e-25
Smith-Waterman score: 504; 44.8% identity (74.4% similar) in 172 aa overlap (11-182:4-169)
10 20 30 40 50 60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
.::.. . . ..:..:::: :::::.::.:.... :.:.:: :::.: .
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
:.: :. ::::::.:.::::. : :.:..:::: .: .:..::. :::.:
CCDS96 Y-----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN
60 70 80 90 100
130 140 150 160 170 180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
: . . .:: :::::: .... ::.. :.. .. . . :..::.:: :::: :::
CCDS96 DREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLT
110 120 130 140 150 160
190 200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
:
CCDS96 WLTSNYKS
170
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 464 init1: 259 opt: 499 Z-score: 560.2 bits: 110.4 E(32554): 7e-25
Smith-Waterman score: 499; 42.5% identity (74.0% similar) in 181 aa overlap (9-189:6-180)
10 20 30 40 50 60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
....: . . ....:...::: :::::.::.:...:.:.:.:: :::.: ..
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
:.. : ::::::.:.::::. : . :.:..::::: : ::..:. ::.:. .
CCDS34 Y-----KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
.: . . .:. :::::. :.. .::. :.. .: : : :..: ::: : :: .::.
CCDS34 EDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRT-WYVQATCATQGTGLYDGLD
120 130 140 150 160 170
190 200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
: . ::
CCDS34 WLSHELSKR
180
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 460 init1: 274 opt: 498 Z-score: 559.1 bits: 110.2 E(32554): 8e-25
Smith-Waterman score: 498; 42.5% identity (73.7% similar) in 186 aa overlap (1-186:1-177)
10 20 30 40 50 60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
::: ... ....: . . ..:...::: :::::.::.:...:.:.:.:: :::.: ..
CCDS15 MGNIFAN---LFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
:...: ::::::.:.::::. : . :.:..::::: : ::..::. :: ..
CCDS15 Y-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
.: . . .:. :::::: :... .:: :.. : . :..: ::: :::: :::.
CCDS15 EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLD
120 130 140 150 160 170
190 200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
: ...
CCDS15 WLSNQLRNQK
180
>>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 (192 aa)
initn: 498 init1: 359 opt: 495 Z-score: 555.5 bits: 109.6 E(32554): 1.3e-24
Smith-Waterman score: 495; 40.1% identity (75.8% similar) in 182 aa overlap (10-191:3-180)
10 20 30 40 50 60
pF1KB8 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
:. :. :. .. ....:::: :::.:.::.:.. . ..:.:: :::.: :.
CCDS31 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
. . : :: ::::::::.: .: : . :::.:.::::.: .:.::.. ....: .
CCDS31 LERNLSLTV----WDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILK
60 70 80 90 100
130 140 150 160 170 180
pF1KB8 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
. ..:::...:::::. ..:. .: ... . .: :. :..:: ::. :.:: .:..
CCDS31 NEHIKNVPVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFR
110 120 130 140 150 160
190 200
pF1KB8 KLHDMIIKRRKMLRQQKKKR
:: .. .. :
CCDS31 KLTGFVKSHMKSRGDTLAFFKQN
170 180 190
200 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:18:41 2016 done: Fri Nov 4 15:18:42 2016
Total Scan time: 1.800 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]