FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8751, 184 aa
  1>>>pF1KB8751 184 - 184 aa - 184 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5144+/-0.000308; mu= 17.7282+/- 0.019
 mean_var=61.4164+/-12.458, 0's: 0 Z-trim(115.8): 7  B-trim: 1557 in 2/53
 Lambda= 0.163656
 statistics sampled from 26564 (26571) to 26564 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.312), width:  16
 Scan time:  5.220

The best scores are:                                      opt bits E(85289)
NP_443096 (OMIM: 609028) TRAF-interacting protein  ( 184) 1237 299.9 1.5e-81
NP_001092691 (OMIM: 612663) TRAF-interacting prote ( 161)  189 52.4 4.3e-07


>>NP_443096 (OMIM: 609028) TRAF-interacting protein with  (184 aa)
 initn: 1237 init1: 1237 opt: 1237  Z-score: 1584.9  bits: 299.9 E(85289): 1.5e-81
Smith-Waterman score: 1237; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB8 MTSFEDADTEETVTCLQMTVYHPGQLQCGIFQSISFNREKLPSSEVVKFGRNSNICHYTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MTSFEDADTEETVTCLQMTVYHPGQLQCGIFQSISFNREKLPSSEVVKFGRNSNICHYTF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QDKQVSRVQFSLQLFKKFNSSVLSFEIKNMSKKTNLIVDSRELGYLNKMDLPYRCMVRFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 QDKQVSRVQFSLQLFKKFNSSVLSFEIKNMSKKTNLIVDSRELGYLNKMDLPYRCMVRFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EYQFLMEKEDGESLEFFETQFILSPRSLLQENNWPPHRPIPEYGTYSLCSSQSSSPTEMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 EYQFLMEKEDGESLEFFETQFILSPRSLLQENNWPPHRPIPEYGTYSLCSSQSSSPTEMD
              130       140       150       160       170       180

           
pF1KB8 ENES
       ::::
NP_443 ENES
           

>>NP_001092691 (OMIM: 612663) TRAF-interacting protein w  (161 aa)
 initn: 194 init1: 142 opt: 189  Z-score: 248.4  bits: 52.4 E(85289): 4.3e-07
Smith-Waterman score: 189; 30.7% identity (62.9% similar) in 140 aa overlap (10-149:2-137)

               10        20        30        40        50        60
pF1KB8 MTSFEDADTEETVTCLQMTVYHPGQLQCGIFQSISFNREKLPSSEVVKFGRNSNICHYTF
                :. .: :....:::  :  . : ..   : .  .: .. .::...  :  .
NP_001         MEKPLTVLRVSLYHP-TLGPSAFANVP-PRLQHDTSPLL-LGRGQDA-HLQL
                       10         20         30         40         

               70        80        90       100       110       120
pF1KB8 QDKQVSRVQFSLQLFKKFNSSVLSFEIKNMSKKTNLIVDSRELGYLNKMDLPYRCMVRFG
       :  ..:: ..::. . . .:..:.: .: .:.:  . :..  : ::... :     : :.
NP_001 QLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFS
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KB8 EYQFLMEKEDGESLEFFETQFILSPRSLLQENNWPPHRPIPEYGTYSLCSSQSSSPTEMD
         :.:.. :.: ::: :   : .::  :.                               
NP_001 GIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG       
      110       120       130       140       150       160        




184 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:13:59 2016 done: Fri Nov  4 15:13:59 2016
 Total Scan time:  5.220 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]