FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8751, 184 aa
  1>>>pF1KB8751 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3582+/-0.000705; mu= 12.6422+/- 0.043
 mean_var=60.2923+/-11.815, 0's: 0 Z-trim(108.7): 12  B-trim: 0 in 0/49
 Lambda= 0.165175
 statistics sampled from 10357 (10361) to 10357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.318), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS34051.1 TIFA gene_id:92610|Hs108|chr4          ( 184) 1237 302.6 8.7e-83


>>CCDS34051.1 TIFA gene_id:92610|Hs108|chr4               (184 aa)
 initn: 1237 init1: 1237 opt: 1237  Z-score: 1599.7  bits: 302.6 E(32554): 8.7e-83
Smith-Waterman score: 1237; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB8 MTSFEDADTEETVTCLQMTVYHPGQLQCGIFQSISFNREKLPSSEVVKFGRNSNICHYTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MTSFEDADTEETVTCLQMTVYHPGQLQCGIFQSISFNREKLPSSEVVKFGRNSNICHYTF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QDKQVSRVQFSLQLFKKFNSSVLSFEIKNMSKKTNLIVDSRELGYLNKMDLPYRCMVRFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QDKQVSRVQFSLQLFKKFNSSVLSFEIKNMSKKTNLIVDSRELGYLNKMDLPYRCMVRFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EYQFLMEKEDGESLEFFETQFILSPRSLLQENNWPPHRPIPEYGTYSLCSSQSSSPTEMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EYQFLMEKEDGESLEFFETQFILSPRSLLQENNWPPHRPIPEYGTYSLCSSQSSSPTEMD
              130       140       150       160       170       180

           
pF1KB8 ENES
       ::::
CCDS34 ENES
           




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:13:58 2016 done: Fri Nov  4 15:13:58 2016
 Total Scan time:  1.630 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]