FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8748, 169 aa
  1>>>pF1KB8748 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8730+/-0.000982; mu= -6.8168+/- 0.059
 mean_var=287.7108+/-56.883, 0's: 0 Z-trim(114.8): 39  B-trim: 0 in 0/54
 Lambda= 0.075613
 statistics sampled from 15300 (15331) to 15300 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.471), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS1033.1 SPRR3 gene_id:6707|Hs108|chr1           ( 169) 1240 147.2 4.5e-36


>>CCDS1033.1 SPRR3 gene_id:6707|Hs108|chr1                (169 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 761.1  bits: 147.2 E(32554): 4.5e-36
Smith-Waterman score: 1240; 99.4% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
               70        80        90       100       110       120

              130       140       150       160         
pF1KB8 GFIKFPEPGAIKVPEQGYTKVPVPGYTKVPEPCPSTVTPGPAQQKTKQK
       ::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS10 GFIKFPEPGAIKVPEQGYTKVPVPGYTKLPEPCPSTVTPGPAQQKTKQK
              130       140       150       160         




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:02:35 2016 done: Sat Nov  5 21:02:36 2016
 Total Scan time:  1.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]