FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8747, 31 aa
  1>>>pF1KB8747 31 - 31 aa - 31 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 1.8138+/-0.000217; mu= 18.0430+/- 0.014
 mean_var=30.1925+/- 6.046, 0's: 0 Z-trim(122.3): 6  B-trim: 11 in 1/56
 Lambda= 0.233413
 statistics sampled from 40198 (40205) to 40198 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.884), E-opt: 0.2 (0.471), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(85289)
NP_003054 (OMIM: 602203) sarcolipin [Homo sapiens] (  31)  195 69.3 1.1e-13


>>NP_003054 (OMIM: 602203) sarcolipin [Homo sapiens]      (31 aa)
 initn: 195 init1: 195 opt: 195  Z-score: 366.6  bits: 69.3 E(85289): 1.1e-13
Smith-Waterman score: 195; 100.0% identity (100.0% similar) in 31 aa overlap (1-31:1-31)

               10        20        30 
pF1KB8 MGINTRELFLNFTIVLITVILMWLLVRSYQY
       :::::::::::::::::::::::::::::::
NP_003 MGINTRELFLNFTIVLITVILMWLLVRSYQY
               10        20        30 




31 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:11:35 2016 done: Fri Nov  4 15:11:35 2016
 Total Scan time:  2.600 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]