Result of FASTA (omim) for
pF1KB8746
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8746, 177 aa
1>>>pF1KB8746 177 - 177 aa - 177 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2141+/-0.00028; mu= 13.9815+/- 0.017
mean_var=86.1702+/-18.317, 0's: 0 Z-trim(120.4): 180 B-trim: 1364 in 1/49
Lambda= 0.138164
statistics sampled from 35360 (35615) to 35360 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.418), width: 16
Scan time: 5.900
The best scores are: opt bits E(85289)
NP_000165 (OMIM: 173515,231200) platelet glycoprot ( 177) 1252 258.4 4.3e-69
XP_011511004 (OMIM: 173515,231200) PREDICTED: plat ( 177) 1252 258.4 4.3e-69
XP_011511003 (OMIM: 173515,231200) PREDICTED: plat ( 177) 1252 258.4 4.3e-69
XP_005247431 (OMIM: 173515,231200) PREDICTED: plat ( 177) 1252 258.4 4.3e-69
NP_000398 (OMIM: 138720,231200) platelet glycoprot ( 206) 333 75.3 6.7e-14
XP_011520834 (OMIM: 173900,601313) PREDICTED: poly (4287) 219 53.8 4.1e-06
NP_001073982 (OMIM: 603104) carboxypeptidase N sub ( 545) 199 49.0 1.5e-05
XP_005269337 (OMIM: 603104) PREDICTED: carboxypept ( 545) 199 49.0 1.5e-05
NP_001278917 (OMIM: 603104) carboxypeptidase N sub ( 545) 199 49.0 1.5e-05
XP_016877935 (OMIM: 614179) PREDICTED: immunoglobu ( 468) 186 46.3 8e-05
NP_001123609 (OMIM: 614179) immunoglobulin superfa ( 745) 186 46.5 0.00011
NP_065902 (OMIM: 614179) immunoglobulin superfamil ( 745) 186 46.5 0.00011
XP_011520142 (OMIM: 614179) PREDICTED: immunoglobu ( 745) 186 46.5 0.00011
NP_001123608 (OMIM: 614179) immunoglobulin superfa ( 745) 186 46.5 0.00011
XP_011520143 (OMIM: 614179) PREDICTED: immunoglobu ( 745) 186 46.5 0.00011
NP_001123610 (OMIM: 614179) immunoglobulin superfa ( 745) 186 46.5 0.00011
NP_001010847 (OMIM: 615212) leucine-rich repeat-co ( 294) 175 43.9 0.00026
NP_001013675 (OMIM: 613505) leucine-rich repeat-co ( 334) 172 43.4 0.00043
NP_001258 (OMIM: 602178) chondroadherin precursor ( 359) 170 43.0 0.0006
XP_011522516 (OMIM: 602178) PREDICTED: chondroadhe ( 440) 170 43.1 0.0007
NP_001333074 (OMIM: 604807) leucine-rich repeat tr ( 660) 171 43.5 0.00081
XP_016876621 (OMIM: 604807) PREDICTED: leucine-ric ( 660) 171 43.5 0.00081
XP_016876618 (OMIM: 604807) PREDICTED: leucine-ric ( 660) 171 43.5 0.00081
XP_005267547 (OMIM: 604807) PREDICTED: leucine-ric ( 660) 171 43.5 0.00081
NP_001333075 (OMIM: 604807) leucine-rich repeat tr ( 660) 171 43.5 0.00081
XP_016876622 (OMIM: 604807) PREDICTED: leucine-ric ( 660) 171 43.5 0.00081
XP_016876624 (OMIM: 604807) PREDICTED: leucine-ric ( 660) 171 43.5 0.00081
XP_016876623 (OMIM: 604807) PREDICTED: leucine-ric ( 660) 171 43.5 0.00081
XP_011534913 (OMIM: 604807) PREDICTED: leucine-ric ( 660) 171 43.5 0.00081
NP_001333072 (OMIM: 604807) leucine-rich repeat tr ( 660) 171 43.5 0.00081
XP_016876620 (OMIM: 604807) PREDICTED: leucine-ric ( 660) 171 43.5 0.00081
NP_001333073 (OMIM: 604807) leucine-rich repeat tr ( 660) 171 43.5 0.00081
NP_037363 (OMIM: 604807) leucine-rich repeat trans ( 660) 171 43.5 0.00081
XP_016876619 (OMIM: 604807) PREDICTED: leucine-ric ( 660) 171 43.5 0.00081
NP_003052 (OMIM: 603742) slit homolog 1 protein pr (1534) 175 44.6 0.00086
NP_848665 (OMIM: 610462) reticulon-4 receptor-like ( 420) 168 42.7 0.00089
NP_055632 (OMIM: 613356) TLR4 interactor with leuc ( 811) 171 43.6 0.00094
XP_011512212 (OMIM: 603746) PREDICTED: slit homolo (1159) 172 43.9 0.0011
NP_001005210 (OMIM: 615213) leucine-rich repeat-co ( 341) 165 42.0 0.0012
XP_005273528 (OMIM: 606823) PREDICTED: adhesion G ( 813) 169 43.2 0.0012
NP_037412 (OMIM: 604806) leucine-rich repeat trans ( 674) 168 42.9 0.0013
XP_005273918 (OMIM: 604806) PREDICTED: leucine-ric ( 674) 168 42.9 0.0013
XP_011543185 (OMIM: 604806) PREDICTED: leucine-ric ( 674) 168 42.9 0.0013
NP_958934 (OMIM: 602059) immunoglobulin superfamil ( 428) 165 42.1 0.0014
NP_005536 (OMIM: 602059) immunoglobulin superfamil ( 428) 165 42.1 0.0014
NP_001137480 (OMIM: 300561) SLIT and NTRK-like pro ( 845) 167 42.8 0.0017
NP_001137477 (OMIM: 300561) SLIT and NTRK-like pro ( 845) 167 42.8 0.0017
NP_001137475 (OMIM: 300561) SLIT and NTRK-like pro ( 845) 167 42.8 0.0017
XP_005262401 (OMIM: 300561) PREDICTED: SLIT and NT ( 845) 167 42.8 0.0017
NP_001137482 (OMIM: 300561) SLIT and NTRK-like pro ( 845) 167 42.8 0.0017
>>NP_000165 (OMIM: 173515,231200) platelet glycoprotein (177 aa)
initn: 1252 init1: 1252 opt: 1252 Z-score: 1361.4 bits: 258.4 E(85289): 4.3e-69
Smith-Waterman score: 1252; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB8 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
130 140 150 160 170
>>XP_011511004 (OMIM: 173515,231200) PREDICTED: platelet (177 aa)
initn: 1252 init1: 1252 opt: 1252 Z-score: 1361.4 bits: 258.4 E(85289): 4.3e-69
Smith-Waterman score: 1252; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB8 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
130 140 150 160 170
>>XP_011511003 (OMIM: 173515,231200) PREDICTED: platelet (177 aa)
initn: 1252 init1: 1252 opt: 1252 Z-score: 1361.4 bits: 258.4 E(85289): 4.3e-69
Smith-Waterman score: 1252; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB8 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
130 140 150 160 170
>>XP_005247431 (OMIM: 173515,231200) PREDICTED: platelet (177 aa)
initn: 1252 init1: 1252 opt: 1252 Z-score: 1361.4 bits: 258.4 E(85289): 4.3e-69
Smith-Waterman score: 1252; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB8 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
130 140 150 160 170
>>NP_000398 (OMIM: 138720,231200) platelet glycoprotein (206 aa)
initn: 264 init1: 158 opt: 333 Z-score: 370.5 bits: 75.3 E(85289): 6.7e-14
Smith-Waterman score: 333; 39.3% identity (60.7% similar) in 168 aa overlap (7-169:13-167)
10 20 30 40 50
pF1KB8 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLT--ALP-ALPA
:.:: .. . ::.::.: : ::: .::: .:: :.:.
NP_000 MGSGPRGALSLLLLLLAPPSRPAAGCPAPCSC-----AGTLVDCGRRGLTWASLPTAFPV
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 RTRHLLLANNSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQ-
: .:.:..:.: ..::: .: :: :.: . :::.::: :. :: :: : .: .
NP_000 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRD
60 70 80 90 100 110
120 130 140 150 160
pF1KB8 VRCASPSLAAHGPLGRLTGYQLGSCGWQLQASWVRPGVL-WDVALVAVAALGLALLAGLL
.::..: ::: : . .:.:. :: : : . . .: :::.:: .::
NP_000 LRCVAPPALR----GRLLPYLAED---ELRAA-CAPGPLCWGALAAQLALLGLGLLHALL
120 130 140 150 160
170
pF1KB8 CATTEALD
NP_000 LVLLLCRLRRLRARARARAAARLSLTDPLVAERAGTDES
170 180 190 200
>>XP_011520834 (OMIM: 173900,601313) PREDICTED: polycyst (4287 aa)
initn: 159 init1: 112 opt: 219 Z-score: 230.7 bits: 53.8 E(85289): 4.1e-06
Smith-Waterman score: 220; 32.1% identity (50.8% similar) in 187 aa overlap (2-171:6-187)
10 20 30 40
pF1KB8 MPAWGALFL---LWATAEA------TKDCPSPCTCRALETMGLWVDCRGHGLTAL-
:: :: : :: : : : :: : . :.: :.:: .:
XP_011 MPPAAPARLALALGLGLWLGALAGGPGRGCGPCEPPCLCGPAPGAACRVNCSGRGLRTLG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 PAL--PARTRHLLLANNSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRT
::: :: . : ...: :... : . .: : :... ::..:::.:..: : :..
XP_011 PALRIPADATALDVSHNLLRALDVGLLANLSALAELNLSGNPFECDCGLAWLPRWAEEQQ
70 80 90 100 110 120
110 120 130 140 150
pF1KB8 -----PEALLQVRCASPSLAAHGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAA
::: . ::.:. : :: . . : :: . : . . :: :. .:
XP_011 VRVVQPEA---ATCAGPGSLAGQPLLGIPLLDSG-CGEEYVAC-LPDNSSGTVAAVSFSA
130 140 150 160 170
160 170
pF1KB8 LGLALLAGLLCATTEALD
.:: :.
XP_011 AHEGLLQPEACSAFCFSTGQGLAALSEQGWCLCGAAQPSSASFACLSLCSGPPPPPAPTC
180 190 200 210 220 230
>>NP_001073982 (OMIM: 603104) carboxypeptidase N subunit (545 aa)
initn: 238 init1: 113 opt: 199 Z-score: 220.7 bits: 49.0 E(85289): 1.5e-05
Smith-Waterman score: 199; 34.8% identity (57.6% similar) in 132 aa overlap (41-159:347-477)
20 30 40 50 60
pF1KB8 WATAEATKDCPSPCTCRALETMGLWVDCRGHGLTAL-PALP---ARTRHLLLANNSLQSV
..:::: ::: .. . : :..:.: ..
NP_001 SLMLSYNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQLTTL
320 330 340 350 360 370
70 80 90 100 110 120
pF1KB8 PPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEAL-LQVRCASPSLAAHGPLG
: : :: .: .: . :::.::: :.:: ::.. : . : .:. ::.:. .
NP_001 PEGIFDTNYNLFNLALHGNPWQCDCHLAYLFNWLQQYTDRLLNIQTYCAGPAYLKGQVVP
380 390 400 410 420 430
130 140 150 160 170
pF1KB8 RLTGYQLGSCGWQ-----LQASW---VRPGVLWDVALVAVAALGLALLAGLLCATTEALD
:. :: : .:..: . : ::.:. ::
NP_001 ALNEKQL-VCPVTRDHLGFQVTWPDESKAGGSWDLAVQERAARSQCTYSNPEGTVVLACD
440 450 460 470 480 490
NP_001 QAQCRWLNVQLSPQQGSLGLQYNASQEWDLRSSCGSLRLTVSIEARAAGP
500 510 520 530 540
>>XP_005269337 (OMIM: 603104) PREDICTED: carboxypeptidas (545 aa)
initn: 238 init1: 113 opt: 199 Z-score: 220.7 bits: 49.0 E(85289): 1.5e-05
Smith-Waterman score: 199; 34.8% identity (57.6% similar) in 132 aa overlap (41-159:347-477)
20 30 40 50 60
pF1KB8 WATAEATKDCPSPCTCRALETMGLWVDCRGHGLTAL-PALP---ARTRHLLLANNSLQSV
..:::: ::: .. . : :..:.: ..
XP_005 SLMLSYNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQLTTL
320 330 340 350 360 370
70 80 90 100 110 120
pF1KB8 PPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEAL-LQVRCASPSLAAHGPLG
: : :: .: .: . :::.::: :.:: ::.. : . : .:. ::.:. .
XP_005 PEGIFDTNYNLFNLALHGNPWQCDCHLAYLFNWLQQYTDRLLNIQTYCAGPAYLKGQVVP
380 390 400 410 420 430
130 140 150 160 170
pF1KB8 RLTGYQLGSCGWQ-----LQASW---VRPGVLWDVALVAVAALGLALLAGLLCATTEALD
:. :: : .:..: . : ::.:. ::
XP_005 ALNEKQL-VCPVTRDHLGFQVTWPDESKAGGSWDLAVQERAARSQCTYSNPEGTVVLACD
440 450 460 470 480 490
XP_005 QAQCRWLNVQLSPQQGSLGLQYNASQEWDLRSSCGSLRLTVSIEARAAGP
500 510 520 530 540
>>NP_001278917 (OMIM: 603104) carboxypeptidase N subunit (545 aa)
initn: 238 init1: 113 opt: 199 Z-score: 220.7 bits: 49.0 E(85289): 1.5e-05
Smith-Waterman score: 199; 34.8% identity (57.6% similar) in 132 aa overlap (41-159:347-477)
20 30 40 50 60
pF1KB8 WATAEATKDCPSPCTCRALETMGLWVDCRGHGLTAL-PALP---ARTRHLLLANNSLQSV
..:::: ::: .. . : :..:.: ..
NP_001 SLMLSYNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQLTTL
320 330 340 350 360 370
70 80 90 100 110 120
pF1KB8 PPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEAL-LQVRCASPSLAAHGPLG
: : :: .: .: . :::.::: :.:: ::.. : . : .:. ::.:. .
NP_001 PEGIFDTNYNLFNLALHGNPWQCDCHLAYLFNWLQQYTDRLLNIQTYCAGPAYLKGQVVP
380 390 400 410 420 430
130 140 150 160 170
pF1KB8 RLTGYQLGSCGWQ-----LQASW---VRPGVLWDVALVAVAALGLALLAGLLCATTEALD
:. :: : .:..: . : ::.:. ::
NP_001 ALNEKQL-VCPVTRDHLGFQVTWPDESKAGGSWDLAVQERAARSQCTYSNPEGTVVLACD
440 450 460 470 480 490
NP_001 QAQCRWLNVQLSPQQGSLGLQYNASQEWDLRSSCGSLRLTVSIEARAAGP
500 510 520 530 540
>>XP_016877935 (OMIM: 614179) PREDICTED: immunoglobulin (468 aa)
initn: 285 init1: 143 opt: 186 Z-score: 207.6 bits: 46.3 E(85289): 8e-05
Smith-Waterman score: 186; 39.5% identity (60.5% similar) in 86 aa overlap (45-127:142-225)
20 30 40 50 60 70
pF1KB8 EATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLANNSLQSVPPGAFDHL
:: ::: : : . :: :... ::.:: :
XP_016 SSFPWSDLRNLSALQLLKMNHNRLGSLPRDALGALPD-LRSLRINNNRLRTLAPGTFDAL
120 130 140 150 160 170
80 90 100 110 120 130
pF1KB8 PQLQTLDVTQNPWHCDCSLTYLRLWLEDRT---PEALLQVRCASPSLAAHGPLGRLTGYQ
:. :.. .::.:: :.:..:. : . :: .. :::: :. ::
XP_016 SALSHLQLYHNPFHCGCGLVWLQAWAASTRVSLPEPD-SIACASPPALQGVPVYRLPALP
180 190 200 210 220
140 150 160 170
pF1KB8 LGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
XP_016 CAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCIADGHPTPRLQWQLQIPGGTVVLEPPVLS
230 240 250 260 270 280
177 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:11:07 2016 done: Fri Nov 4 15:11:08 2016
Total Scan time: 5.900 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]