FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8746, 177 aa
  1>>>pF1KB8746 177 - 177 aa - 177 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2499+/-0.000618; mu= 13.7825+/- 0.037
 mean_var=82.1731+/-16.819, 0's: 0 Z-trim(113.4): 93  B-trim: 0 in 0/50
 Lambda= 0.141485
 statistics sampled from 13924 (14038) to 13924 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.431), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS3055.1 GP9 gene_id:2815|Hs108|chr3             ( 177) 1252 264.2   3e-71
CCDS42980.1 GP1BB gene_id:2812|Hs108|chr22         ( 206)  333 76.6   1e-14


>>CCDS3055.1 GP9 gene_id:2815|Hs108|chr3                  (177 aa)
 initn: 1252 init1: 1252 opt: 1252  Z-score: 1392.5  bits: 264.2 E(32554): 3e-71
Smith-Waterman score: 1252; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KB8 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQVRCASPSLAA
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KB8 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HGPLGRLTGYQLGSCGWQLQASWVRPGVLWDVALVAVAALGLALLAGLLCATTEALD
              130       140       150       160       170       

>>CCDS42980.1 GP1BB gene_id:2812|Hs108|chr22              (206 aa)
 initn: 264 init1: 158 opt: 333  Z-score: 377.8  bits: 76.6 E(32554): 1e-14
Smith-Waterman score: 333; 39.3% identity (60.7% similar) in 168 aa overlap (7-169:13-167)

                     10        20        30        40           50 
pF1KB8       MPAWGALFLLWATAEATKDCPSPCTCRALETMGLWVDCRGHGLT--ALP-ALPA
                   :.::   .. .  ::.::.:      :  :::  .:::  .:: :.:.
CCDS42 MGSGPRGALSLLLLLLAPPSRPAAGCPAPCSC-----AGTLVDCGRRGLTWASLPTAFPV
               10        20        30             40        50     

              60        70        80        90       100       110 
pF1KB8 RTRHLLLANNSLQSVPPGAFDHLPQLQTLDVTQNPWHCDCSLTYLRLWLEDRTPEALLQ-
        : .:.:..:.: ..::: .: :: :.:  .  :::.::: :. :: ::  :  .:  . 
CCDS42 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRD
          60        70        80        90       100       110     

              120       130       140        150       160         
pF1KB8 VRCASPSLAAHGPLGRLTGYQLGSCGWQLQASWVRPGVL-WDVALVAVAALGLALLAGLL
       .::..:        :::  :   .   .:.:.   :: : : .  . .: :::.:: .::
CCDS42 LRCVAPPALR----GRLLPYLAED---ELRAA-CAPGPLCWGALAAQLALLGLGLLHALL
         120           130          140        150       160       

     170                                      
pF1KB8 CATTEALD                               
                                              
CCDS42 LVLLLCRLRRLRARARARAAARLSLTDPLVAERAGTDES
       170       180       190       200      




177 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:11:06 2016 done: Fri Nov  4 15:11:07 2016
 Total Scan time:  2.160 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]