Result of FASTA (omim) for
pF1KB8745
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8745, 402 aa
1>>>pF1KB8745 402 - 402 aa - 402 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9102+/-0.000315; mu= 15.2653+/- 0.020
mean_var=86.4435+/-17.866, 0's: 0 Z-trim(118.4): 21 B-trim: 445 in 1/54
Lambda= 0.137946
statistics sampled from 31220 (31241) to 31220 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.366), width: 16
Scan time: 8.650
The best scores are: opt bits E(85289)
NP_776159 (OMIM: 300701) zinc finger CCHC domain-c ( 402) 2666 540.1 3.7e-153
NP_001299820 (OMIM: 300701) zinc finger CCHC domai ( 402) 2666 540.1 3.7e-153
NP_006020 (OMIM: 604010) paraneoplastic antigen Ma ( 353) 511 111.2 4.2e-24
NP_009188 (OMIM: 603970) paraneoplastic antigen Ma ( 364) 492 107.4 5.9e-23
XP_011542667 (OMIM: 603970) PREDICTED: paraneoplas ( 364) 492 107.4 5.9e-23
NP_001096620 (OMIM: 300916) paraneoplastic antigen ( 448) 489 106.8 1.1e-22
XP_016884741 (OMIM: 300916) PREDICTED: paraneoplas ( 448) 489 106.8 1.1e-22
NP_443158 (OMIM: 300916) paraneoplastic antigen-li ( 448) 489 106.8 1.1e-22
NP_001171853 (OMIM: 300916) paraneoplastic antigen ( 448) 489 106.8 1.1e-22
NP_001096621 (OMIM: 300916) paraneoplastic antigen ( 448) 489 106.8 1.1e-22
XP_016884742 (OMIM: 300916) PREDICTED: paraneoplas ( 448) 489 106.8 1.1e-22
NP_001269464 (OMIM: 300675) paraneoplastic antigen ( 455) 469 102.9 1.7e-21
NP_037496 (OMIM: 300675) paraneoplastic antigen Ma ( 463) 469 102.9 1.7e-21
NP_116271 (OMIM: 300917) paraneoplastic antigen-li ( 399) 465 102.0 2.6e-21
NP_071434 (OMIM: 609485) modulator of apoptosis 1 ( 351) 395 88.1 3.7e-17
>>NP_776159 (OMIM: 300701) zinc finger CCHC domain-conta (402 aa)
initn: 2666 init1: 2666 opt: 2666 Z-score: 2870.7 bits: 540.1 E(85289): 3.7e-153
Smith-Waterman score: 2666; 100.0% identity (100.0% similar) in 402 aa overlap (1-402:1-402)
10 20 30 40 50 60
pF1KB8 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC
310 320 330 340 350 360
370 380 390 400
pF1KB8 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL
::::::::::::::::::::::::::::::::::::::::::
NP_776 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL
370 380 390 400
>>NP_001299820 (OMIM: 300701) zinc finger CCHC domain-co (402 aa)
initn: 2666 init1: 2666 opt: 2666 Z-score: 2870.7 bits: 540.1 E(85289): 3.7e-153
Smith-Waterman score: 2666; 100.0% identity (100.0% similar) in 402 aa overlap (1-402:1-402)
10 20 30 40 50 60
pF1KB8 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC
310 320 330 340 350 360
370 380 390 400
pF1KB8 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL
::::::::::::::::::::::::::::::::::::::::::
NP_001 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL
370 380 390 400
>>NP_006020 (OMIM: 604010) paraneoplastic antigen Ma1 [H (353 aa)
initn: 500 init1: 460 opt: 511 Z-score: 553.7 bits: 111.2 E(85289): 4.2e-24
Smith-Waterman score: 511; 40.4% identity (68.3% similar) in 218 aa overlap (5-220:119-332)
10 20 30
pF1KB8 MASIIARV-GNSRRLNAPLPPWAHSMLRS-LGRS
.::: : . .: : :: :
NP_006 KVLFKPPTSDAEFLERLHLFLAREGWTVQDVARVLGFQNPTPTPGPEMPAEMLNYILDNV
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB8 LGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRG
. :.. :. . . ::::: .:. :::::. :: ..: :: .:..:. :: .:::..:::
NP_006 IQPLVESIWYKRLTLFSGRDIPGPGEETFDPWLEHTNEVLEEWQVSDVEKRRRLMESLRG
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB8 PAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRL
:: .:.:.:...:: ...:. :.:.. ::: ::: :. ::.:: : ::: : :::::
NP_006 PAADVIRILKSNNPAITTAECLKALEQVFGSVESSRDAQIKFLNTYQNPGEKLSAYVIRL
210 220 230 240 250 260
160 170 180 190 200 210
pF1KB8 EVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLEL
: ::.... : : . ..:..::.:.. :.. : .: .: . . . ::...:
NP_006 EPLLQKVVEKGAIDKDNVNQARLEQVIAGANHSGAIRRQLW----LTGAGEGPAPNLFQL
270 280 290 300 310 320
220 230 240 250 260 270
pF1KB8 IRMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDD
. ..::::
NP_006 LVQIREEEAKEEEEEAEATLLQLGLEGHF
330 340 350
>>NP_009188 (OMIM: 603970) paraneoplastic antigen Ma2 [H (364 aa)
initn: 459 init1: 406 opt: 492 Z-score: 533.1 bits: 107.4 E(85289): 5.9e-23
Smith-Waterman score: 492; 38.5% identity (73.2% similar) in 205 aa overlap (22-226:143-341)
10 20 30 40 50
pF1KB8 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGR
:: . ...... :.. : :....:::
NP_009 EGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLP-MRYRKLRVFSGS
120 130 140 150 160 170
60 70 80 90 100 110
pF1KB8 VVPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVA
.::: ::.:: :: :.. .. .: ..: :: . : ..::::: ..:...:: ::..::
NP_009 AVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPSISVE
180 190 200 210 220 230
120 130 140 150 160 170
pF1KB8 DFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDAN
. :.:.: ::: :: ::. ....: : .:::.: ::.:::. :. :.. : .. :.
NP_009 ECLEAFKQVFGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRRIAD
240 250 260 270 280 290
180 190 200 210 220 230
pF1KB8 RTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKR
..::.:.. :. :.. : ::... ..: :.::::....::::. . .:
NP_009 QVRLEQVMAGATLNQMLWCRLREL-----KDQGPPPSFLELMKVIREEEEEEASFENESI
300 310 320 330 340
240 250 260 270 280 290
pF1KB8 PKRSESMVERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWG
NP_009 EEPEERDGYGRWNHEGDD
350 360
>>XP_011542667 (OMIM: 603970) PREDICTED: paraneoplastic (364 aa)
initn: 459 init1: 406 opt: 492 Z-score: 533.1 bits: 107.4 E(85289): 5.9e-23
Smith-Waterman score: 492; 38.5% identity (73.2% similar) in 205 aa overlap (22-226:143-341)
10 20 30 40 50
pF1KB8 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGR
:: . ...... :.. : :....:::
XP_011 EGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLP-MRYRKLRVFSGS
120 130 140 150 160 170
60 70 80 90 100 110
pF1KB8 VVPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVA
.::: ::.:: :: :.. .. .: ..: :: . : ..::::: ..:...:: ::..::
XP_011 AVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPSISVE
180 190 200 210 220 230
120 130 140 150 160 170
pF1KB8 DFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDAN
. :.:.: ::: :: ::. ....: : .:::.: ::.:::. :. :.. : .. :.
XP_011 ECLEAFKQVFGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRRIAD
240 250 260 270 280 290
180 190 200 210 220 230
pF1KB8 RTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKR
..::.:.. :. :.. : ::... ..: :.::::....::::. . .:
XP_011 QVRLEQVMAGATLNQMLWCRLREL-----KDQGPPPSFLELMKVIREEEEEEASFENESI
300 310 320 330 340
240 250 260 270 280 290
pF1KB8 PKRSESMVERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWG
XP_011 EEPEERDGYGRWNHEGDD
350 360
>>NP_001096620 (OMIM: 300916) paraneoplastic antigen-lik (448 aa)
initn: 492 init1: 411 opt: 489 Z-score: 528.6 bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)
10 20 30 40 50 60
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
: : :: :..:.::: . :. ::::::
NP_001 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
120 130 140 150 160 170
70 80 90 100 110 120
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
.:: ::. ..: :..:: :: .::...::::: .::::::.: ...: . : :.: .::
NP_001 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
180 190 200 210 220 230
130 140 150 160 170 180
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
..:. ... .:..: :::.: ...::: ::.:.. . .. .... ::..::
NP_001 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
240 250 260 270 280 290
190 200 210 220 230
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
.. :: .:. . ... ::::::....:.::.:.. : .: : .:. :...
NP_001 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
300 310 320 330 340 350
240 250 260 270 280 290
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
: . : ..: ..
NP_001 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
360 370 380 390 400 410
>>XP_016884741 (OMIM: 300916) PREDICTED: paraneoplastic (448 aa)
initn: 492 init1: 411 opt: 489 Z-score: 528.6 bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)
10 20 30 40 50 60
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
: : :: :..:.::: . :. ::::::
XP_016 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
120 130 140 150 160 170
70 80 90 100 110 120
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
.:: ::. ..: :..:: :: .::...::::: .::::::.: ...: . : :.: .::
XP_016 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
180 190 200 210 220 230
130 140 150 160 170 180
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
..:. ... .:..: :::.: ...::: ::.:.. . .. .... ::..::
XP_016 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
240 250 260 270 280 290
190 200 210 220 230
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
.. :: .:. . ... ::::::....:.::.:.. : .: : .:. :...
XP_016 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
300 310 320 330 340 350
240 250 260 270 280 290
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
: . : ..: ..
XP_016 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
360 370 380 390 400 410
>>NP_443158 (OMIM: 300916) paraneoplastic antigen-like p (448 aa)
initn: 492 init1: 411 opt: 489 Z-score: 528.6 bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)
10 20 30 40 50 60
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
: : :: :..:.::: . :. ::::::
NP_443 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
120 130 140 150 160 170
70 80 90 100 110 120
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
.:: ::. ..: :..:: :: .::...::::: .::::::.: ...: . : :.: .::
NP_443 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
180 190 200 210 220 230
130 140 150 160 170 180
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
..:. ... .:..: :::.: ...::: ::.:.. . .. .... ::..::
NP_443 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
240 250 260 270 280 290
190 200 210 220 230
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
.. :: .:. . ... ::::::....:.::.:.. : .: : .:. :...
NP_443 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
300 310 320 330 340 350
240 250 260 270 280 290
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
: . : ..: ..
NP_443 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
360 370 380 390 400 410
>>NP_001171853 (OMIM: 300916) paraneoplastic antigen-lik (448 aa)
initn: 492 init1: 411 opt: 489 Z-score: 528.6 bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)
10 20 30 40 50 60
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
: : :: :..:.::: . :. ::::::
NP_001 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
120 130 140 150 160 170
70 80 90 100 110 120
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
.:: ::. ..: :..:: :: .::...::::: .::::::.: ...: . : :.: .::
NP_001 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
180 190 200 210 220 230
130 140 150 160 170 180
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
..:. ... .:..: :::.: ...::: ::.:.. . .. .... ::..::
NP_001 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
240 250 260 270 280 290
190 200 210 220 230
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
.. :: .:. . ... ::::::....:.::.:.. : .: : .:. :...
NP_001 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
300 310 320 330 340 350
240 250 260 270 280 290
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
: . : ..: ..
NP_001 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
360 370 380 390 400 410
>>NP_001096621 (OMIM: 300916) paraneoplastic antigen-lik (448 aa)
initn: 492 init1: 411 opt: 489 Z-score: 528.6 bits: 106.8 E(85289): 1.1e-22
Smith-Waterman score: 489; 36.8% identity (69.7% similar) in 228 aa overlap (33-256:147-369)
10 20 30 40 50 60
pF1KB8 SIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE
: : :: :..:.::: . :. ::::::
NP_001 MTDVARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFE
120 130 140 150 160 170
70 80 90 100 110 120
pF1KB8 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG
.:: ::. ..: :..:: :: .::...::::: .::::::.: ...: . : :.: .::
NP_001 DWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFG
180 190 200 210 220 230
130 140 150 160 170 180
pF1KB8 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG
..:. ... .:..: :::.: ...::: ::.:.. . .. .... ::..::
NP_001 DKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARV
240 250 260 270 280 290
190 200 210 220 230
pF1KB8 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD--AFIKRK-RPK-RSESM
.. :: .:. . ... ::::::....:.::.:.. : .: : .:. :...
NP_001 AMTPALRGKLELL-----DQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGA
300 310 320 330 340 350
240 250 260 270 280 290
pF1KB8 VERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR
: . : ..: ..
NP_001 SGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATY
360 370 380 390 400 410
402 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:10:31 2016 done: Fri Nov 4 15:10:32 2016
Total Scan time: 8.650 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]