FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8744, 127 aa
  1>>>pF1KB8744 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9026+/-0.000312; mu= 8.5660+/- 0.020
 mean_var=82.7176+/-16.025, 0's: 0 Z-trim(117.3): 8  B-trim: 0 in 0/56
 Lambda= 0.141018
 statistics sampled from 29264 (29271) to 29264 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.343), width:  16
 Scan time:  4.920

The best scores are:                                      opt bits E(85289)
NP_150638 (OMIM: 616905) MORF4 family-associated p ( 127)  680 147.1   7e-36
NP_001258982 (OMIM: 616905) MORF4 family-associate ( 127)  680 147.1   7e-36
NP_001258983 (OMIM: 616905) MORF4 family-associate ( 103)  541 118.8 1.9e-27


>>NP_150638 (OMIM: 616905) MORF4 family-associated prote  (127 aa)
 initn: 680 init1: 680 opt: 680  Z-score: 765.2  bits: 147.1 E(85289): 7e-36
Smith-Waterman score: 680; 85.0% identity (92.9% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MRPLDIDEVEAPEEVEVLEPEEDFEQFLLPVINEMREDIASLIREHGRAYLRTRSKLWEM
       :::::: :.  ::::::::::::::::::::::::::::::: :::::::::.:::::::
NP_150 MRPLDIVELAEPEEVEVLEPEEDFEQFLLPVINEMREDIASLTREHGRAYLRNRSKLWEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DNMLIQIKTQVEASEESALNHVQHPSGEADERVSELCEKAEEKAKEIAKMAEMLVELVWR
       :::::::::::::::::::::.:.:.  :. :... :::::::::::::::::::::: :
NP_150 DNMLIQIKTQVEASEESALNHLQNPGDAAEGRAAKRCEKAEEKAKEIAKMAEMLVELVRR
               70        80        90       100       110       120

              
pF1KB8 IERSESS
       ::.::::
NP_150 IEKSESS
              

>>NP_001258982 (OMIM: 616905) MORF4 family-associated pr  (127 aa)
 initn: 680 init1: 680 opt: 680  Z-score: 765.2  bits: 147.1 E(85289): 7e-36
Smith-Waterman score: 680; 85.0% identity (92.9% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MRPLDIDEVEAPEEVEVLEPEEDFEQFLLPVINEMREDIASLIREHGRAYLRTRSKLWEM
       :::::: :.  ::::::::::::::::::::::::::::::: :::::::::.:::::::
NP_001 MRPLDIVELAEPEEVEVLEPEEDFEQFLLPVINEMREDIASLTREHGRAYLRNRSKLWEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DNMLIQIKTQVEASEESALNHVQHPSGEADERVSELCEKAEEKAKEIAKMAEMLVELVWR
       :::::::::::::::::::::.:.:.  :. :... :::::::::::::::::::::: :
NP_001 DNMLIQIKTQVEASEESALNHLQNPGDAAEGRAAKRCEKAEEKAKEIAKMAEMLVELVRR
               70        80        90       100       110       120

              
pF1KB8 IERSESS
       ::.::::
NP_001 IEKSESS
              

>>NP_001258983 (OMIM: 616905) MORF4 family-associated pr  (103 aa)
 initn: 566 init1: 541 opt: 541  Z-score: 613.7  bits: 118.8 E(85289): 1.9e-27
Smith-Waterman score: 541; 82.2% identity (92.1% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KB8 MRPLDIDEVEAPEEVEVLEPEEDFEQFLLPVINEMREDIASLIREHGRAYLRTRSKLWEM
       :::::: :.  ::::::::::::::::::::::::::::::: :::::::::.:::::::
NP_001 MRPLDIVELAEPEEVEVLEPEEDFEQFLLPVINEMREDIASLTREHGRAYLRNRSKLWEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DNMLIQIKTQVEASEESALNHVQHPSGEADERVSELCEKAEEKAKEIAKMAEMLVELVWR
       :::::::::::::::::::::.:.:.  :. :... :::.:                   
NP_001 DNMLIQIKTQVEASEESALNHLQNPGDAAEGRAAKRCEKSESS                 
               70        80        90       100                    

              
pF1KB8 IERSESS




127 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:09:57 2016 done: Fri Nov  4 15:09:58 2016
 Total Scan time:  4.920 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]