FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8744, 127 aa
  1>>>pF1KB8744 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6669+/-0.00074; mu= 9.8683+/- 0.045
 mean_var=78.7920+/-15.430, 0's: 0 Z-trim(110.0): 13  B-trim: 0 in 0/50
 Lambda= 0.144488
 statistics sampled from 11294 (11298) to 11294 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.347), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS3392.1 MRFAP1L1 gene_id:114932|Hs108|chr4      ( 127)  813 178.0 1.3e-45
CCDS3389.1 MRFAP1 gene_id:93621|Hs108|chr4         ( 127)  680 150.3   3e-37


>>CCDS3392.1 MRFAP1L1 gene_id:114932|Hs108|chr4           (127 aa)
 initn: 813 init1: 813 opt: 813  Z-score: 932.1  bits: 178.0 E(32554): 1.3e-45
Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MRPLDIDEVEAPEEVEVLEPEEDFEQFLLPVINEMREDIASLIREHGRAYLRTRSKLWEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MRPLDIDEVEAPEEVEVLEPEEDFEQFLLPVINEMREDIASLIREHGRAYLRTRSKLWEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DNMLIQIKTQVEASEESALNHVQHPSGEADERVSELCEKAEEKAKEIAKMAEMLVELVWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DNMLIQIKTQVEASEESALNHVQHPSGEADERVSELCEKAEEKAKEIAKMAEMLVELVWR
               70        80        90       100       110       120

              
pF1KB8 IERSESS
       :::::::
CCDS33 IERSESS
              

>>CCDS3389.1 MRFAP1 gene_id:93621|Hs108|chr4              (127 aa)
 initn: 680 init1: 680 opt: 680  Z-score: 782.3  bits: 150.3 E(32554): 3e-37
Smith-Waterman score: 680; 85.0% identity (92.9% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MRPLDIDEVEAPEEVEVLEPEEDFEQFLLPVINEMREDIASLIREHGRAYLRTRSKLWEM
       :::::: :.  ::::::::::::::::::::::::::::::: :::::::::.:::::::
CCDS33 MRPLDIVELAEPEEVEVLEPEEDFEQFLLPVINEMREDIASLTREHGRAYLRNRSKLWEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DNMLIQIKTQVEASEESALNHVQHPSGEADERVSELCEKAEEKAKEIAKMAEMLVELVWR
       :::::::::::::::::::::.:.:.  :. :... :::::::::::::::::::::: :
CCDS33 DNMLIQIKTQVEASEESALNHLQNPGDAAEGRAAKRCEKAEEKAKEIAKMAEMLVELVRR
               70        80        90       100       110       120

              
pF1KB8 IERSESS
       ::.::::
CCDS33 IEKSESS
              




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:09:56 2016 done: Fri Nov  4 15:09:57 2016
 Total Scan time:  1.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]