FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8740, 183 aa
  1>>>pF1KB8740 183 - 183 aa - 183 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8109+/-0.000247; mu= 16.6466+/- 0.016
 mean_var=67.7915+/-13.702, 0's: 0 Z-trim(121.5): 8  B-trim: 59 in 1/56
 Lambda= 0.155771
 statistics sampled from 38304 (38314) to 38304 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.449), width:  16
 Scan time:  5.210

The best scores are:                                      opt bits E(85289)
NP_001092260 (OMIM: 300961) mid1-interacting prote ( 183) 1267 292.4 2.8e-79
NP_001092261 (OMIM: 300961) mid1-interacting prote ( 183) 1267 292.4 2.8e-79
NP_067065 (OMIM: 300961) mid1-interacting protein  ( 183) 1267 292.4 2.8e-79
NP_003242 (OMIM: 601926) thyroid hormone-inducible ( 146)  152 41.7 0.00063


>>NP_001092260 (OMIM: 300961) mid1-interacting protein 1  (183 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1544.4  bits: 292.4 E(85289): 2.8e-79
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB8 MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPPPPAGSEEGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPPPPAGSEEGSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFGN
              130       140       150       160       170       180

          
pF1KB8 WGH
       :::
NP_001 WGH
          

>>NP_001092261 (OMIM: 300961) mid1-interacting protein 1  (183 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1544.4  bits: 292.4 E(85289): 2.8e-79
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB8 MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPPPPAGSEEGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPPPPAGSEEGSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFGN
              130       140       150       160       170       180

          
pF1KB8 WGH
       :::
NP_001 WGH
          

>>NP_067065 (OMIM: 300961) mid1-interacting protein 1 [H  (183 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1544.4  bits: 292.4 E(85289): 2.8e-79
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB8 MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPPPPAGSEEGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 GCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPPPPAGSEEGSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 WKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFGN
              130       140       150       160       170       180

          
pF1KB8 WGH
       :::
NP_067 WGH
          

>>NP_003242 (OMIM: 601926) thyroid hormone-inducible hep  (146 aa)
 initn: 286 init1: 152 opt: 152  Z-score: 191.5  bits: 41.7 E(85289): 0.00063
Smith-Waterman score: 269; 33.5% identity (60.3% similar) in 179 aa overlap (2-177:1-143)

               10        20        30        40        50        60
pF1KB8 MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSG
        ::.      :. :...:.:. . :.::.:.::.::::::: :. ::             
NP_003  MQVLTKRYPKNCLLTVMDRYAAEVHNMEQVVMIPSLLRDVQLSGPG-------------
                10        20        30        40                   

               70        80        90       100       110          
pF1KB8 GCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPP---PPAGSEE
                    :.:..   ::  :.:.....::.:  :.. :.: .       :::::
NP_003 -------------GQAQAE--AP--DLYTYFTMLKAICVDVDHGLLPREEWQAKVAGSEE
                      50            60        70        80         

       120       130       140       150       160       170       
pF1KB8 GSAWKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIG
       ... .....     . :.: .:: ::: ::: :. .:: .: .::.::. .: .:..  :
NP_003 NGTAETEEV-----EDESA-SGELDLEAQFHLHFSSLHHILMHLTEKAQEVTRKYQEMTG
      90            100        110       120       130       140   

       180   
pF1KB8 FGNWGH
             
NP_003 QVW   
             




183 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:07:47 2016 done: Fri Nov  4 15:07:48 2016
 Total Scan time:  5.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]