FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8740, 183 aa
  1>>>pF1KB8740 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3286+/-0.000543; mu= 13.4973+/- 0.033
 mean_var=65.1472+/-12.889, 0's: 0 Z-trim(114.0): 9  B-trim: 16 in 1/51
 Lambda= 0.158901
 statistics sampled from 14575 (14581) to 14575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.448), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS14249.1 MID1IP1 gene_id:58526|Hs108|chrX       ( 183) 1267 298.0 2.1e-81


>>CCDS14249.1 MID1IP1 gene_id:58526|Hs108|chrX            (183 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1574.9  bits: 298.0 E(32554): 2.1e-81
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB8 MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPPPPAGSEEGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPPPPAGSEEGSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFGN
              130       140       150       160       170       180

          
pF1KB8 WGH
       :::
CCDS14 WGH
          




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:07:46 2016 done: Fri Nov  4 15:07:47 2016
 Total Scan time:  2.030 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]