Result of FASTA (omim) for
pF1KB8738
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8738, 111 aa
1>>>pF1KB8738 111 - 111 aa - 111 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6431+/-0.000257; mu= 14.7497+/- 0.016
mean_var=62.1757+/-12.367, 0's: 0 Z-trim(121.2): 17 B-trim: 0 in 0/55
Lambda= 0.162654
statistics sampled from 37544 (37562) to 37544 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.44), width: 16
Scan time: 4.660
The best scores are: opt bits E(85289)
NP_055195 (OMIM: 300361) protein BEX3 isoform b [H ( 111) 798 194.3 3.5e-50
NP_996798 (OMIM: 300361) protein BEX3 isoform b [H ( 111) 798 194.3 3.5e-50
NP_001269603 (OMIM: 300361) protein BEX3 isoform c ( 191) 798 194.5 5.2e-50
NP_996800 (OMIM: 300361) protein BEX3 isoform a [H ( 101) 732 178.7 1.5e-45
NP_001153032 (OMIM: 300693) protein BEX5 [Homo sap ( 111) 406 102.3 1.7e-22
NP_001012996 (OMIM: 300693) protein BEX5 [Homo sap ( 111) 406 102.3 1.7e-22
NP_001121160 (OMIM: 300692) protein BEX4 [Homo sap ( 120) 371 94.1 5.4e-20
NP_001073894 (OMIM: 300692) protein BEX4 [Homo sap ( 120) 371 94.1 5.4e-20
NP_060946 (OMIM: 300690) protein BEX1 [Homo sapien ( 125) 263 68.8 2.4e-12
NP_001161873 (OMIM: 300691) protein BEX2 isoform 3 ( 128) 234 62.0 2.7e-10
NP_116010 (OMIM: 300691) protein BEX2 isoform 3 [H ( 128) 234 62.0 2.7e-10
NP_001161872 (OMIM: 300691) protein BEX2 isoform 2 ( 159) 234 62.0 3.2e-10
NP_001161871 (OMIM: 300691) protein BEX2 isoform 1 ( 160) 234 62.1 3.2e-10
NP_689491 (OMIM: 300771) transcription elongation ( 100) 136 38.9 0.0019
XP_016885144 (OMIM: 300771) PREDICTED: transcripti ( 100) 136 38.9 0.0019
>>NP_055195 (OMIM: 300361) protein BEX3 isoform b [Homo (111 aa)
initn: 798 init1: 798 opt: 798 Z-score: 1022.0 bits: 194.3 E(85289): 3.5e-50
Smith-Waterman score: 798; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KB8 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
70 80 90 100 110
>>NP_996798 (OMIM: 300361) protein BEX3 isoform b [Homo (111 aa)
initn: 798 init1: 798 opt: 798 Z-score: 1022.0 bits: 194.3 E(85289): 3.5e-50
Smith-Waterman score: 798; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KB8 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
70 80 90 100 110
>>NP_001269603 (OMIM: 300361) protein BEX3 isoform c [Ho (191 aa)
initn: 798 init1: 798 opt: 798 Z-score: 1018.8 bits: 194.5 E(85289): 5.2e-50
Smith-Waterman score: 798; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:81-191)
10 20 30
pF1KB8 MANIHQENEEMEQPMQNGEEDRPLGGGEGH
::::::::::::::::::::::::::::::
NP_001 PAPRCPELGGLAFGPGKSGAEKQPEKKNLIMANIHQENEEMEQPMQNGEEDRPLGGGEGH
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB8 QPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPAGNRRGQARRLAPNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCL
120 130 140 150 160 170
100 110
pF1KB8 RILMGELSNHHDHHDEFCLMP
:::::::::::::::::::::
NP_001 RILMGELSNHHDHHDEFCLMP
180 190
>>NP_996800 (OMIM: 300361) protein BEX3 isoform a [Homo (101 aa)
initn: 732 init1: 732 opt: 732 Z-score: 938.8 bits: 178.7 E(85289): 1.5e-45
Smith-Waterman score: 732; 100.0% identity (100.0% similar) in 101 aa overlap (11-111:1-101)
10 20 30 40 50 60
pF1KB8 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
10 20 30 40 50
70 80 90 100 110
pF1KB8 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
60 70 80 90 100
>>NP_001153032 (OMIM: 300693) protein BEX5 [Homo sapiens (111 aa)
initn: 393 init1: 188 opt: 406 Z-score: 524.8 bits: 102.3 E(85289): 1.7e-22
Smith-Waterman score: 406; 57.0% identity (73.7% similar) in 114 aa overlap (1-111:1-111)
10 20 30 40 50
pF1KB8 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN--
: :. .::. .:. :.:: : ::::: ..:.:: .: ::.: .::: ..
NP_001 MENVPKENKVVEKAPVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNI
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 DGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
: . ::::::: :::::::.:::.:::::: ::::.:. ::::::::::::
NP_001 DMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP
60 70 80 90 100 110
>>NP_001012996 (OMIM: 300693) protein BEX5 [Homo sapiens (111 aa)
initn: 393 init1: 188 opt: 406 Z-score: 524.8 bits: 102.3 E(85289): 1.7e-22
Smith-Waterman score: 406; 57.0% identity (73.7% similar) in 114 aa overlap (1-111:1-111)
10 20 30 40 50
pF1KB8 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN--
: :. .::. .:. :.:: : ::::: ..:.:: .: ::.: .::: ..
NP_001 MENVPKENKVVEKAPVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNI
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 DGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
: . ::::::: :::::::.:::.:::::: ::::.:. ::::::::::::
NP_001 DMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP
60 70 80 90 100 110
>>NP_001121160 (OMIM: 300692) protein BEX4 [Homo sapiens (120 aa)
initn: 394 init1: 131 opt: 371 Z-score: 480.0 bits: 94.1 E(85289): 5.4e-20
Smith-Waterman score: 371; 55.0% identity (75.7% similar) in 111 aa overlap (3-111:16-120)
10 20 30 40
pF1KB8 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAP
: .:::: :: : :: ::.: ::::::..:.:: :::..:::.:
NP_001 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
:::::::::.:. . . : :.: :. .: ::.:: :: :.:. .:. : .::.:
NP_001 NFRWAIPNRHIEHNEARD--DVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD---
70 80 90 100 110
110
pF1KB8 EFCLMP
:::.:
NP_001 -FCLIP
120
>>NP_001073894 (OMIM: 300692) protein BEX4 [Homo sapiens (120 aa)
initn: 394 init1: 131 opt: 371 Z-score: 480.0 bits: 94.1 E(85289): 5.4e-20
Smith-Waterman score: 371; 55.0% identity (75.7% similar) in 111 aa overlap (3-111:16-120)
10 20 30 40
pF1KB8 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAP
: .:::: :: : :: ::.: ::::::..:.:: :::..:::.:
NP_001 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
:::::::::.:. . . : :.: :. .: ::.:: :: :.:. .:. : .::.:
NP_001 NFRWAIPNRHIEHNEARD--DVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD---
70 80 90 100 110
110
pF1KB8 EFCLMP
:::.:
NP_001 -FCLIP
120
>>NP_060946 (OMIM: 300690) protein BEX1 [Homo sapiens] (125 aa)
initn: 239 init1: 105 opt: 263 Z-score: 342.8 bits: 68.8 E(85289): 2.4e-12
Smith-Waterman score: 263; 43.4% identity (62.8% similar) in 113 aa overlap (1-111:14-125)
10 20 30 40
pF1KB8 MANIHQENEEMEQPMQNGEE-DRPLGGGEGHQPAGNRRG-QARRLAP
: : .::::: :: ..:: :: .:: : :::: ..:.
NP_060 MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYCVPRGNRRRFRVRQPIL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
..:: . .: . ..:: . ::.:.. .:::: :: . :: . . ::::::
NP_060 QYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLSHSLRAVSTD-PPHHDHHD
70 80 90 100 110
110
pF1KB8 EFCLMP
::::::
NP_060 EFCLMP
120
>>NP_001161873 (OMIM: 300691) protein BEX2 isoform 3 [Ho (128 aa)
initn: 190 init1: 105 opt: 234 Z-score: 305.9 bits: 62.0 E(85289): 2.7e-10
Smith-Waterman score: 234; 41.2% identity (62.3% similar) in 114 aa overlap (3-111:16-128)
10 20 30 40
pF1KB8 MANIHQENEEM---EQPMQNGEE-DRPLGGGEGHQPAGNRRG-QARR
:..:::.: :: ..:: ::. .: : :::: ..:.
NP_001 MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVSEYCVPRGNRRRFRVRQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 LAPNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD
..:: : .: . ..:: . ::.:.. .:::: :: . :: . . :::
NP_001 PILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLSHSLRAVSTD-PPHHD
70 80 90 100 110
110
pF1KB8 HHDEFCLMP
:::::::::
NP_001 HHDEFCLMP
120
111 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:06:11 2016 done: Fri Nov 4 15:06:12 2016
Total Scan time: 4.660 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]