Result of FASTA (ccds) for
pF1KB8737
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8737, 143 aa
1>>>pF1KB8737 143 - 143 aa - 143 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9755+/-0.000679; mu= 13.2777+/- 0.041
mean_var=59.8056+/-11.983, 0's: 0 Z-trim(110.4): 37 B-trim: 364 in 2/48
Lambda= 0.165845
statistics sampled from 11516 (11555) to 11516 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.355), width: 16
Scan time: 1.540
The best scores are: opt bits E(32554)
CCDS8410.1 H2AFX gene_id:3014|Hs108|chr11 ( 143) 905 224.1 2.3e-59
CCDS938.1 HIST2H2AB gene_id:317772|Hs108|chr1 ( 130) 749 186.7 3.7e-48
CCDS4562.1 HIST1H2AA gene_id:221613|Hs108|chr6 ( 131) 740 184.6 1.6e-47
CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 ( 130) 739 184.4 1.9e-47
CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1 ( 129) 738 184.1 2.3e-47
CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 ( 130) 738 184.1 2.3e-47
CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 ( 130) 738 184.1 2.3e-47
CCDS4628.1 HIST1H2AJ gene_id:8331|Hs108|chr6 ( 128) 737 183.9 2.7e-47
CCDS4622.1 HIST1H2AH gene_id:85235|Hs108|chr6 ( 128) 737 183.9 2.7e-47
CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 ( 130) 737 183.9 2.7e-47
CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6 ( 130) 737 183.9 2.7e-47
CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 ( 130) 737 183.9 2.7e-47
CCDS4626.1 HIST1H2AI gene_id:8329|Hs108|chr6 ( 130) 737 183.9 2.7e-47
CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 ( 130) 737 183.9 2.7e-47
CCDS31752.1 H2AFJ gene_id:55766|Hs108|chr12 ( 129) 735 183.4 3.7e-47
CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1 ( 130) 735 183.4 3.7e-47
CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6 ( 130) 733 182.9 5.2e-47
CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6 ( 130) 732 182.7 6.2e-47
CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6 ( 130) 732 182.7 6.2e-47
CCDS4184.1 H2AFY gene_id:9555|Hs108|chr5 ( 369) 524 133.2 1.4e-31
CCDS4183.1 H2AFY gene_id:9555|Hs108|chr5 ( 371) 524 133.2 1.4e-31
CCDS4185.1 H2AFY gene_id:9555|Hs108|chr5 ( 372) 524 133.2 1.4e-31
CCDS7296.1 H2AFY2 gene_id:55506|Hs108|chr10 ( 372) 503 128.2 4.6e-30
CCDS5496.1 H2AFV gene_id:94239|Hs108|chr7 ( 128) 447 114.5 2e-26
CCDS3654.1 H2AFZ gene_id:3015|Hs108|chr4 ( 128) 443 113.5 4e-26
CCDS5495.1 H2AFV gene_id:94239|Hs108|chr7 ( 114) 401 103.4 3.8e-23
CCDS5497.1 H2AFV gene_id:94239|Hs108|chr7 ( 102) 350 91.2 1.6e-19
CCDS35461.1 H2AFB2 gene_id:474381|Hs108|chrX ( 115) 312 82.2 9.9e-17
CCDS35464.1 H2AFB3 gene_id:83740|Hs108|chrX ( 115) 312 82.2 9.9e-17
CCDS35458.1 H2AFB1 gene_id:474382|Hs108|chrX ( 115) 303 80.0 4.4e-16
CCDS47581.1 H2AFV gene_id:94239|Hs108|chr7 ( 66) 237 64.1 1.6e-11
>>CCDS8410.1 H2AFX gene_id:3014|Hs108|chr11 (143 aa)
initn: 905 init1: 905 opt: 905 Z-score: 1179.2 bits: 224.1 E(32554): 2.3e-59
Smith-Waterman score: 905; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:::::::::::::::::::::::
CCDS84 TSATVGPKAPSGGKKATQASQEY
130 140
>>CCDS938.1 HIST2H2AB gene_id:317772|Hs108|chr1 (130 aa)
initn: 749 init1: 749 opt: 749 Z-score: 978.1 bits: 186.7 E(32554): 3.7e-48
Smith-Waterman score: 749; 97.5% identity (99.2% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
:::::: :::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS93 AEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:
CCDS93 TESHKPGKNK
130
>>CCDS4562.1 HIST1H2AA gene_id:221613|Hs108|chr6 (131 aa)
initn: 740 init1: 740 opt: 740 Z-score: 966.4 bits: 184.6 E(32554): 1.6e-47
Smith-Waterman score: 740; 95.0% identity (99.2% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
:::::: :::::::.:::::::::::::::.:::::::.::::.::::::::::::::::
CCDS45 MSGRGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:
CCDS45 TESHHHKAQSK
130
>>CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 (130 aa)
initn: 739 init1: 739 opt: 739 Z-score: 965.2 bits: 184.4 E(32554): 1.9e-47
Smith-Waterman score: 739; 97.5% identity (98.3% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
:::::: :::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:
CCDS45 TESHHKAKGK
130
>>CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1 (129 aa)
initn: 738 init1: 738 opt: 738 Z-score: 963.9 bits: 184.1 E(32554): 2.3e-47
Smith-Waterman score: 738; 96.7% identity (98.3% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
:::::: :::::::::::::::::::::::::::::::.::::::::::::.::::::::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS93 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:
CCDS93 TESHKAKSK
>>CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 (130 aa)
initn: 738 init1: 738 opt: 738 Z-score: 963.9 bits: 184.1 E(32554): 2.3e-47
Smith-Waterman score: 738; 96.7% identity (98.3% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
:::::: :::::::::::::::::::::::::::::::.::::::::::::.::::::::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS93 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:
CCDS93 TESHHKAKGK
130
>>CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 (130 aa)
initn: 738 init1: 738 opt: 738 Z-score: 963.9 bits: 184.1 E(32554): 2.3e-47
Smith-Waterman score: 738; 96.7% identity (98.3% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
:::::: :::::::::::::::::::::::::::::::.::::::::::::.::::::::
CCDS30 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS30 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:
CCDS30 TESHHKAKGK
130
>>CCDS4628.1 HIST1H2AJ gene_id:8331|Hs108|chr6 (128 aa)
initn: 737 init1: 737 opt: 737 Z-score: 962.7 bits: 183.9 E(32554): 2.7e-47
Smith-Waterman score: 737; 96.7% identity (98.3% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
:::::: :::::::::.:::::::::::::::::::::.:::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:
CCDS46 TESHHKTK
>>CCDS4622.1 HIST1H2AH gene_id:85235|Hs108|chr6 (128 aa)
initn: 737 init1: 737 opt: 737 Z-score: 962.7 bits: 183.9 E(32554): 2.7e-47
Smith-Waterman score: 737; 96.7% identity (98.3% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
:::::: :::::::::.:::::::::::::::::::::.:::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:
CCDS46 TESHHKAK
>>CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 (130 aa)
initn: 737 init1: 737 opt: 737 Z-score: 962.6 bits: 183.9 E(32554): 2.7e-47
Smith-Waterman score: 737; 96.7% identity (98.3% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB8 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
:::::: :::::::::.:::::::::::::::::::::.:::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130 140
pF1KB8 TSATVGPKAPSGGKKATQASQEY
:
CCDS46 TESHHKAKGK
130
143 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:05:37 2016 done: Fri Nov 4 15:05:37 2016
Total Scan time: 1.540 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]