FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8735, 274 aa
  1>>>pF1KB8735 274 - 274 aa - 274 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8723+/-0.00078; mu= 2.1138+/- 0.047
 mean_var=287.0598+/-57.939, 0's: 0 Z-trim(118.4): 14  B-trim: 0 in 0/55
 Lambda= 0.075699
 statistics sampled from 19276 (19287) to 19276 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.592), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS4419.1 PRR7 gene_id:80758|Hs108|chr5           ( 274) 1997 230.2 1.2e-60


>>CCDS4419.1 PRR7 gene_id:80758|Hs108|chr5                (274 aa)
 initn: 1997 init1: 1997 opt: 1997  Z-score: 1202.1  bits: 230.2 E(32554): 1.2e-60
Smith-Waterman score: 1997; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KB8 MVMSQGTYTFLTCFAGFWLIWGLIVLLCCFCSFLRRRLKRRQEERLREQNLRALELEPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVMSQGTYTFLTCFAGFWLIWGLIVLLCCFCSFLRRRLKRRQEERLREQNLRALELEPLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LEGSLAGSPPGLAPPQPPPHRSRLEAPAHAHSHPHVHVHPLLHHGPAQPHAHAHPHPHHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LEGSLAGSPPGLAPPQPPPHRSRLEAPAHAHSHPHVHVHPLLHHGPAQPHAHAHPHPHHH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ALPHPPPTHLSVPPRPWSYPRQAESDMSKPPCYEEAVLMAEPPPPYSEVLTDTRGLYRKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ALPHPPPTHLSVPPRPWSYPRQAESDMSKPPCYEEAVLMAEPPPPYSEVLTDTRGLYRKI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VTPFLSRRDSAEKQEQPPPSYKPLFLDRGYTSALHLPSAPRPAPPCPALCLQADRGRRVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VTPFLSRRDSAEKQEQPPPSYKPLFLDRGYTSALHLPSAPRPAPPCPALCLQADRGRRVF
              190       200       210       220       230       240

              250       260       270    
pF1KB8 PSWTDSELSSREPLEHGAWRLPVSIPLFGRTTAV
       ::::::::::::::::::::::::::::::::::
CCDS44 PSWTDSELSSREPLEHGAWRLPVSIPLFGRTTAV
              250       260       270    




274 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:32:14 2016 done: Sat Nov  5 21:32:14 2016
 Total Scan time:  3.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]