FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8729, 841 aa
  1>>>pF1KB8729 841 - 841 aa - 841 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5678+/-0.000873; mu= 19.6107+/- 0.052
 mean_var=73.9513+/-14.922, 0's: 0 Z-trim(106.4): 26  B-trim: 78 in 1/53
 Lambda= 0.149143
 statistics sampled from 8940 (8950) to 8940 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.275), width:  16
 Scan time:  4.390

The best scores are:                                      opt bits E(32554)
CCDS12047.1 MED16 gene_id:10025|Hs108|chr19        ( 877) 5596 1213.9       0


>>CCDS12047.1 MED16 gene_id:10025|Hs108|chr19             (877 aa)
 initn: 5596 init1: 5596 opt: 5596  Z-score: 6500.7  bits: 1213.9 E(32554):    0
Smith-Waterman score: 5596; 100.0% identity (100.0% similar) in 828 aa overlap (1-828:1-828)

               10        20        30        40        50        60
pF1KB8 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 MIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 FYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 ISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRPVDEPAMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRPVDEPAMK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 RPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEVGLALRHLLFLLEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEVGLALRHLLFLLEY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 CMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 VTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTEICTKITDVDIDKVMINLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTEICTKITDVDIDKVMINLK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 TEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPGHSFLRDGTSLGMLRELMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPGHSFLRDGTSLGMLRELMV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 VIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 PSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGSAATLQLDGLARAPGQPKID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGSAATLQLDGLARAPGQPKID
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 HLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQRWIKNCLCGGLWWRVPLSY
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS12 HLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQRWIKNCLAVEGRGPDACVT
              790       800       810       820       830       840

                                            
pF1KB8 P                                    
                                            
CCDS12 SRASEEAPAFVQLGPQSTHHSPRTPRSLDHLHPEDRP
              850       860       870       




841 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:00:45 2016 done: Fri Nov  4 15:00:46 2016
 Total Scan time:  4.390 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]