Result of FASTA (omim) for
pF1KB8728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8728, 372 aa
1>>>pF1KB8728 372 - 372 aa - 372 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3538+/-0.000353; mu= 17.4571+/- 0.022
mean_var=79.7046+/-16.061, 0's: 0 Z-trim(114.9): 206 B-trim: 21 in 1/51
Lambda= 0.143659
statistics sampled from 24826 (25068) to 24826 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.294), width: 16
Scan time: 8.480
The best scores are: opt bits E(85289)
NP_059110 (OMIM: 607057) ubl carboxyl-terminal hyd ( 372) 2555 539.0 6.4e-153
XP_006724137 (OMIM: 607057) PREDICTED: ubl carboxy ( 298) 2048 433.9 2.3e-121
XP_016873442 (OMIM: 614460) PREDICTED: ubiquitin c (1275) 412 95.3 8.3e-19
NP_060414 (OMIM: 614460) ubiquitin carboxyl-termin (1287) 412 95.3 8.4e-19
NP_001269588 (OMIM: 614460) ubiquitin carboxyl-ter (1355) 412 95.3 8.7e-19
NP_001317137 (OMIM: 614460) ubiquitin carboxyl-ter (1375) 412 95.3 8.8e-19
XP_011509703 (OMIM: 610570) PREDICTED: ubiquitin c ( 807) 299 71.7 6.6e-12
XP_011509700 (OMIM: 610570) PREDICTED: ubiquitin c (1165) 299 71.8 8.7e-12
XP_016859915 (OMIM: 610570) PREDICTED: ubiquitin c (1236) 299 71.9 9.1e-12
XP_011509699 (OMIM: 610570) PREDICTED: ubiquitin c (1240) 299 71.9 9.2e-12
NP_060688 (OMIM: 610570) ubiquitin carboxyl-termin (1247) 299 71.9 9.2e-12
XP_006712675 (OMIM: 610570) PREDICTED: ubiquitin c (1248) 299 71.9 9.2e-12
XP_011509698 (OMIM: 610570) PREDICTED: ubiquitin c (1252) 299 71.9 9.2e-12
XP_016869710 (OMIM: 615143) PREDICTED: ubiquitin c ( 675) 286 69.0 3.7e-11
XP_005251723 (OMIM: 615143) PREDICTED: ubiquitin c ( 675) 286 69.0 3.7e-11
NP_001103773 (OMIM: 615143) ubiquitin carboxyl-ter ( 914) 286 69.1 4.7e-11
NP_001008563 (OMIM: 615143) ubiquitin carboxyl-ter ( 914) 286 69.1 4.7e-11
NP_006667 (OMIM: 615143) ubiquitin carboxyl-termin ( 914) 286 69.1 4.7e-11
XP_005251722 (OMIM: 615143) PREDICTED: ubiquitin c ( 914) 286 69.1 4.7e-11
XP_011516463 (OMIM: 615143) PREDICTED: ubiquitin c ( 914) 286 69.1 4.7e-11
XP_011516464 (OMIM: 615143) PREDICTED: ubiquitin c ( 914) 286 69.1 4.7e-11
XP_005270747 (OMIM: 610569) PREDICTED: ubiquitin c (2025) 272 66.4 6.5e-10
XP_016856217 (OMIM: 615146) PREDICTED: ubiquitin c ( 763) 266 64.9 7.2e-10
XP_016856216 (OMIM: 615146) PREDICTED: ubiquitin c ( 763) 266 64.9 7.2e-10
XP_016856323 (OMIM: 610569) PREDICTED: ubiquitin c (2445) 272 66.5 7.5e-10
XP_016856322 (OMIM: 610569) PREDICTED: ubiquitin c (2465) 272 66.5 7.5e-10
XP_016856213 (OMIM: 615146) PREDICTED: ubiquitin c ( 812) 266 64.9 7.6e-10
XP_016856212 (OMIM: 615146) PREDICTED: ubiquitin c ( 820) 266 64.9 7.6e-10
NP_963920 (OMIM: 615146) ubiquitin carboxyl-termin ( 828) 266 64.9 7.7e-10
XP_005270706 (OMIM: 615146) PREDICTED: ubiquitin c ( 851) 266 64.9 7.9e-10
NP_056121 (OMIM: 610569) ubiquitin carboxyl-termin (2620) 272 66.5 7.9e-10
XP_016856321 (OMIM: 610569) PREDICTED: ubiquitin c (2639) 272 66.5 7.9e-10
XP_016856320 (OMIM: 610569) PREDICTED: ubiquitin c (2640) 272 66.5 7.9e-10
XP_016856211 (OMIM: 615146) PREDICTED: ubiquitin c ( 903) 266 64.9 8.2e-10
NP_963918 (OMIM: 615146) ubiquitin carboxyl-termin ( 911) 266 64.9 8.3e-10
NP_001138545 (OMIM: 300975,300984) ubiquitin carbo ( 438) 262 63.8 8.4e-10
XP_005270705 (OMIM: 615146) PREDICTED: ubiquitin c ( 934) 266 64.9 8.4e-10
NP_055832 (OMIM: 615146) ubiquitin carboxyl-termin ( 942) 266 64.9 8.5e-10
XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 259 63.2 1.1e-09
NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 259 63.2 1.1e-09
NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 259 63.2 1.2e-09
XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 259 63.3 1.7e-09
NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 259 63.3 1.7e-09
XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 259 63.3 1.7e-09
XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 261 63.9 1.7e-09
XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 261 63.9 1.7e-09
NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 261 63.9 1.8e-09
XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 261 63.9 1.9e-09
XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 261 63.9 1.9e-09
XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 261 63.9 1.9e-09
>>NP_059110 (OMIM: 607057) ubl carboxyl-terminal hydrola (372 aa)
initn: 2555 init1: 2555 opt: 2555 Z-score: 2866.4 bits: 539.0 E(85289): 6.4e-153
Smith-Waterman score: 2555; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB8 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GQTCCLNSLIQVFVMNVDFTRILKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 GQTCCLNSLIQVFVMNVDFTRILKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 LELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 CAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 QVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 QYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQE
310 320 330 340 350 360
370
pF1KB8 TAYLLVYMKMEC
::::::::::::
NP_059 TAYLLVYMKMEC
370
>>XP_006724137 (OMIM: 607057) PREDICTED: ubl carboxyl-te (298 aa)
initn: 2048 init1: 2048 opt: 2048 Z-score: 2299.8 bits: 433.9 E(85289): 2.3e-121
Smith-Waterman score: 2048; 100.0% identity (100.0% similar) in 298 aa overlap (75-372:1-298)
50 60 70 80 90 100
pF1KB8 PRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRILKRITVPRGADEQRRSVPFQML
::::::::::::::::::::::::::::::
XP_006 MNVDFTRILKRITVPRGADEQRRSVPFQML
10 20 30
110 120 130 140 150 160
pF1KB8 LLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB8 QALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSS
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB8 KSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQI
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB8 LPMKRESCDAEEQSGGQYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPMKRESCDAEEQSGGQYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSW
220 230 240 250 260 270
350 360 370
pF1KB8 EDIQCTYGNPNYHWQETAYLLVYMKMEC
::::::::::::::::::::::::::::
XP_006 EDIQCTYGNPNYHWQETAYLLVYMKMEC
280 290
>>XP_016873442 (OMIM: 614460) PREDICTED: ubiquitin carbo (1275 aa)
initn: 547 init1: 228 opt: 412 Z-score: 458.6 bits: 95.3 E(85289): 8.3e-19
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:86-437)
30 40 50 60 70 80
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
: ::: : ..:: ::::.:.. :. .:
XP_016 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
: . .. .. :.:.:. :. .: :...:.. ... . . . :::. .
XP_016 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
: ... .... ... .. .. :: ..:: . :..:..:. : ...: .:: .
XP_016 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
.:. . ..:.::: :.::. :.. .. ::: : :: ... :.. :.: ::..: ::..
XP_016 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
240 250 260 270 280 290
270 280 290
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
. ..: . ::. ::.: .. . . ::: :.
XP_016 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
300 310 320 330 340 350
300 310 320 330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
: .:: . ::::.:..: : : .::: . :.. : .
XP_016 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
360 370 380 390 400 410
340 350 360 370
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. :::... .. :::. :.:
XP_016 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
420 430 440 450 460 470
>>NP_060414 (OMIM: 614460) ubiquitin carboxyl-terminal h (1287 aa)
initn: 547 init1: 228 opt: 412 Z-score: 458.5 bits: 95.3 E(85289): 8.4e-19
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:98-449)
30 40 50 60 70 80
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
: ::: : ..:: ::::.:.. :. .:
NP_060 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
: . .. .. :.:.:. :. .: :...:.. ... . . . :::. .
NP_060 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
: ... .... ... .. .. :: ..:: . :..:..:. : ...: .:: .
NP_060 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
.:. . ..:.::: :.::. :.. .. ::: : :: ... :.. :.: ::..: ::..
NP_060 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
250 260 270 280 290 300
270 280 290
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
. ..: . ::. ::.: .. . . ::: :.
NP_060 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
310 320 330 340 350 360
300 310 320 330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
: .:: . ::::.:..: : : .::: . :.. : .
NP_060 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
370 380 390 400 410 420
340 350 360 370
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. :::... .. :::. :.:
NP_060 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
430 440 450 460 470 480
>>NP_001269588 (OMIM: 614460) ubiquitin carboxyl-termina (1355 aa)
initn: 547 init1: 228 opt: 412 Z-score: 458.2 bits: 95.3 E(85289): 8.7e-19
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:166-517)
30 40 50 60 70 80
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
: ::: : ..:: ::::.:.. :. .:
NP_001 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
140 150 160 170 180 190
90 100 110 120 130 140
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
: . .. .. :.:.:. :. .: :...:.. ... . . . :::. .
NP_001 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
200 210 220 230 240 250
150 160 170 180 190 200
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
: ... .... ... .. .. :: ..:: . :..:..:. : ...: .:: .
NP_001 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
260 270 280 290 300 310
210 220 230 240 250 260
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
.:. . ..:.::: :.::. :.. .. ::: : :: ... :.. :.: ::..: ::..
NP_001 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
320 330 340 350 360 370
270 280 290
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
. ..: . ::. ::.: .. . . ::: :.
NP_001 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
380 390 400 410 420 430
300 310 320 330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
: .:: . ::::.:..: : : .::: . :.. : .
NP_001 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
440 450 460 470 480 490
340 350 360 370
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. :::... .. :::. :.:
NP_001 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
500 510 520 530 540 550
>>NP_001317137 (OMIM: 614460) ubiquitin carboxyl-termina (1375 aa)
initn: 547 init1: 228 opt: 412 Z-score: 458.1 bits: 95.3 E(85289): 8.8e-19
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:186-537)
30 40 50 60 70 80
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
: ::: : ..:: ::::.:.. :. .:
NP_001 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
160 170 180 190 200 210
90 100 110 120 130 140
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
: . .. .. :.:.:. :. .: :...:.. ... . . . :::. .
NP_001 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
220 230 240 250 260 270
150 160 170 180 190 200
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
: ... .... ... .. .. :: ..:: . :..:..:. : ...: .:: .
NP_001 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
280 290 300 310 320 330
210 220 230 240 250 260
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
.:. . ..:.::: :.::. :.. .. ::: : :: ... :.. :.: ::..: ::..
NP_001 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
340 350 360 370 380 390
270 280 290
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
. ..: . ::. ::.: .. . . ::: :.
NP_001 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
400 410 420 430 440 450
300 310 320 330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
: .:: . ::::.:..: : : .::: . :.. : .
NP_001 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
460 470 480 490 500 510
340 350 360 370
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. :::... .. :::. :.:
NP_001 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
520 530 540 550 560 570
>>XP_011509703 (OMIM: 610570) PREDICTED: ubiquitin carbo (807 aa)
initn: 193 init1: 77 opt: 299 Z-score: 334.8 bits: 71.7 E(85289): 6.6e-12
Smith-Waterman score: 299; 25.1% identity (55.6% similar) in 338 aa overlap (29-348:34-348)
10 20 30 40 50
pF1KB8 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLH
:: . . .. ::: .: :..
XP_011 FLRVVFSFTMFGDLFEEEYSTVSNNQYGKGKKLKTKALEPPAPREFT-------NLSGIR
10 20 30 40 50
60 70 80 90 100
pF1KB8 NIGQTCCLNSLIQVFVMNVDFTRILKRITVPR--G-------ADEQRRSVPFQMLLLLEK
: : :: ::::.:.. .. .: . : . :. : : . : .:.:. :. .
XP_011 NQGGTCYLNSLLQTLHFTPEFREALFSLG-PEELGLFEDKDKPDAKVRIIPLQLQRLFAQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 MQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYT
. :.:. .:. . . . :::. .: :.. .. ... . . . ::
XP_011 LLLLDQEAASTADLTDSFGWTSNEEMRQHDVQELNRILFSALETSLVGTSGHDLIYRLYH
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 IRVKDSLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCF
. ....: .: : :. ..: : ... .:.. ::::: .. .:. . .. .
XP_011 GTIVNQIVCKECKNVSERQEDFLDLTVAVKNVSG-----LEDALWNMYVEEEVFDCDNLY
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 -CENCGKKTRGKQVLKLTHLPQTLTIHLMRFS---IRNSQTRKI-CHSLYFPQSLDFSQI
: .: . ... . :: .:: ::. :.::. .. . .. :.. :: ....
XP_011 HCGTCDRLVKAAKSAKLRKLPPFLTVSLLRFNFDFVKCERYKETSCYT--FPLRINLK--
240 250 260 270 280
290 300 310 320 330 340
pF1KB8 LPMKRESCDAEEQSGGQY--ELFAVIAHVGMADSGHYCVYIRNAVD--GKWFCFNDSNIC
:. :. : . .: .::.:: : : .::: :::.. :: :.: ....
XP_011 -PF----CEQSELDDLEYIYDLFSVIIHKGGCYGGHYHVYIKD-VDHLGNWQFQEEKSKP
290 300 310 320 330 340
350 360 370
pF1KB8 LVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. .:.:
XP_011 DVNLKDLQSEEEIDHPLMILKAILLEEENNLIPVDQLGQKLLKKIGISWNKKYRKQHGPL
350 360 370 380 390 400
>>XP_011509700 (OMIM: 610570) PREDICTED: ubiquitin carbo (1165 aa)
initn: 193 init1: 77 opt: 299 Z-score: 332.6 bits: 71.8 E(85289): 8.7e-12
Smith-Waterman score: 299; 25.1% identity (55.6% similar) in 338 aa overlap (29-348:34-348)
10 20 30 40 50
pF1KB8 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLH
:: . . .. ::: .: :..
XP_011 FLRVVFSFTMFGDLFEEEYSTVSNNQYGKGKKLKTKALEPPAPREFT-------NLSGIR
10 20 30 40 50
60 70 80 90 100
pF1KB8 NIGQTCCLNSLIQVFVMNVDFTRILKRITVPR--G-------ADEQRRSVPFQMLLLLEK
: : :: ::::.:.. .. .: . : . :. : : . : .:.:. :. .
XP_011 NQGGTCYLNSLLQTLHFTPEFREALFSLG-PEELGLFEDKDKPDAKVRIIPLQLQRLFAQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 MQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYT
. :.:. .:. . . . :::. .: :.. .. ... . . . ::
XP_011 LLLLDQEAASTADLTDSFGWTSNEEMRQHDVQELNRILFSALETSLVGTSGHDLIYRLYH
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 IRVKDSLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCF
. ....: .: : :. ..: : ... .:.. ::::: .. .:. . .. .
XP_011 GTIVNQIVCKECKNVSERQEDFLDLTVAVKNVSG-----LEDALWNMYVEEEVFDCDNLY
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 -CENCGKKTRGKQVLKLTHLPQTLTIHLMRFS---IRNSQTRKI-CHSLYFPQSLDFSQI
: .: . ... . :: .:: ::. :.::. .. . .. :.. :: ....
XP_011 HCGTCDRLVKAAKSAKLRKLPPFLTVSLLRFNFDFVKCERYKETSCYT--FPLRINLK--
240 250 260 270 280
290 300 310 320 330 340
pF1KB8 LPMKRESCDAEEQSGGQY--ELFAVIAHVGMADSGHYCVYIRNAVD--GKWFCFNDSNIC
:. :. : . .: .::.:: : : .::: :::.. :: :.: ....
XP_011 -PF----CEQSELDDLEYIYDLFSVIIHKGGCYGGHYHVYIKD-VDHLGNWQFQEEKSKP
290 300 310 320 330 340
350 360 370
pF1KB8 LVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. .:.:
XP_011 DVNLKDLQSEEEIDHPLMILKAILLEEENNLIPVDQLGQKLLKKIGISWNKKYRKQHGPL
350 360 370 380 390 400
>>XP_016859915 (OMIM: 610570) PREDICTED: ubiquitin carbo (1236 aa)
initn: 193 init1: 77 opt: 299 Z-score: 332.2 bits: 71.9 E(85289): 9.1e-12
Smith-Waterman score: 299; 25.1% identity (55.6% similar) in 338 aa overlap (29-348:22-336)
10 20 30 40 50 60
pF1KB8 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNI
:: . . .. ::: .: :..:
XP_016 MFGDLFEEEYSTVSNNQYGKGKKLKTKALEPPAPREFT-------NLSGIRNQ
10 20 30 40
70 80 90 100 110
pF1KB8 GQTCCLNSLIQVFVMNVDFTRILKRITVPR--G-------ADEQRRSVPFQMLLLLEKMQ
: :: ::::.:.. .. .: . : . :. : : . : .:.:. :. ..
XP_016 GGTCYLNSLLQTLHFTPEFREALFSLG-PEELGLFEDKDKPDAKVRIIPLQLQRLFAQLL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 DSRQKAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYTIR
:.:. .:. . . . :::. .: :.. .. ... . . . ::
XP_016 LLDQEAASTADLTDSFGWTSNEEMRQHDVQELNRILFSALETSLVGTSGHDLIYRLYHGT
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 VKDSLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCF-C
. ....: .: : :. ..: : ... .:.. ::::: .. .:. . .. . :
XP_016 IVNQIVCKECKNVSERQEDFLDLTVAVKNVSG-----LEDALWNMYVEEEVFDCDNLYHC
170 180 190 200 210 220
240 250 260 270 280
pF1KB8 ENCGKKTRGKQVLKLTHLPQTLTIHLMRFS---IRNSQTRKI-CHSLYFPQSLDFSQILP
.: . ... . :: .:: ::. :.::. .. . .. :.. :: .... :
XP_016 GTCDRLVKAAKSAKLRKLPPFLTVSLLRFNFDFVKCERYKETSCYT--FPLRINLK---P
230 240 250 260 270
290 300 310 320 330 340
pF1KB8 MKRESCDAEEQSGGQY--ELFAVIAHVGMADSGHYCVYIRNAVD--GKWFCFNDSNICLV
. :. : . .: .::.:: : : .::: :::.. :: :.: .... :
XP_016 F----CEQSELDDLEYIYDLFSVIIHKGGCYGGHYHVYIKD-VDHLGNWQFQEEKSKPDV
280 290 300 310 320 330
350 360 370
pF1KB8 SWEDIQCTYGNPNYHWQETAYLLVYMKMEC
. .:.:
XP_016 NLKDLQSEEEIDHPLMILKAILLEEENNLIPVDQLGQKLLKKIGISWNKKYRKQHGPLRK
340 350 360 370 380 390
>>XP_011509699 (OMIM: 610570) PREDICTED: ubiquitin carbo (1240 aa)
initn: 193 init1: 77 opt: 299 Z-score: 332.2 bits: 71.9 E(85289): 9.2e-12
Smith-Waterman score: 299; 25.1% identity (55.6% similar) in 338 aa overlap (29-348:22-336)
10 20 30 40 50 60
pF1KB8 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNI
:: . . .. ::: .: :..:
XP_011 MFGDLFEEEYSTVSNNQYGKGKKLKTKALEPPAPREFT-------NLSGIRNQ
10 20 30 40
70 80 90 100 110
pF1KB8 GQTCCLNSLIQVFVMNVDFTRILKRITVPR--G-------ADEQRRSVPFQMLLLLEKMQ
: :: ::::.:.. .. .: . : . :. : : . : .:.:. :. ..
XP_011 GGTCYLNSLLQTLHFTPEFREALFSLG-PEELGLFEDKDKPDAKVRIIPLQLQRLFAQLL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 DSRQKAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYTIR
:.:. .:. . . . :::. .: :.. .. ... . . . ::
XP_011 LLDQEAASTADLTDSFGWTSNEEMRQHDVQELNRILFSALETSLVGTSGHDLIYRLYHGT
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 VKDSLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCF-C
. ....: .: : :. ..: : ... .:.. ::::: .. .:. . .. . :
XP_011 IVNQIVCKECKNVSERQEDFLDLTVAVKNVSG-----LEDALWNMYVEEEVFDCDNLYHC
170 180 190 200 210 220
240 250 260 270 280
pF1KB8 ENCGKKTRGKQVLKLTHLPQTLTIHLMRFS---IRNSQTRKI-CHSLYFPQSLDFSQILP
.: . ... . :: .:: ::. :.::. .. . .. :.. :: .... :
XP_011 GTCDRLVKAAKSAKLRKLPPFLTVSLLRFNFDFVKCERYKETSCYT--FPLRINLK---P
230 240 250 260 270
290 300 310 320 330 340
pF1KB8 MKRESCDAEEQSGGQY--ELFAVIAHVGMADSGHYCVYIRNAVD--GKWFCFNDSNICLV
. :. : . .: .::.:: : : .::: :::.. :: :.: .... :
XP_011 F----CEQSELDDLEYIYDLFSVIIHKGGCYGGHYHVYIKD-VDHLGNWQFQEEKSKPDV
280 290 300 310 320 330
350 360 370
pF1KB8 SWEDIQCTYGNPNYHWQETAYLLVYMKMEC
. .:.:
XP_011 NLKDLQSEEEIDHPLMILKAILLEEENNLIPVDQLGQKLLKKIGISWNKKYRKQHGPLRK
340 350 360 370 380 390
372 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:59:37 2016 done: Fri Nov 4 14:59:38 2016
Total Scan time: 8.480 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]