Result of FASTA (ccds) for
pF1KB8728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8728, 372 aa
1>>>pF1KB8728 372 - 372 aa - 372 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7444+/-0.000826; mu= 14.8727+/- 0.050
mean_var=73.1048+/-14.373, 0's: 0 Z-trim(108.0): 87 B-trim: 3 in 1/50
Lambda= 0.150003
statistics sampled from 9844 (9935) to 9844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.305), width: 16
Scan time: 2.820
The best scores are: opt bits E(32554)
CCDS13752.1 USP18 gene_id:11274|Hs108|chr22 ( 372) 2555 562.0 3e-160
CCDS41619.1 USP47 gene_id:55031|Hs108|chr11 (1287) 412 98.5 3.6e-20
CCDS60725.1 USP47 gene_id:55031|Hs108|chr11 (1355) 412 98.5 3.8e-20
CCDS81554.1 USP47 gene_id:55031|Hs108|chr11 (1375) 412 98.5 3.8e-20
CCDS44084.1 USP48 gene_id:84196|Hs108|chr1 ( 485) 359 86.8 4.4e-17
CCDS81277.1 USP48 gene_id:84196|Hs108|chr1 ( 983) 359 86.9 8.1e-17
CCDS30623.1 USP48 gene_id:84196|Hs108|chr1 (1035) 359 86.9 8.4e-17
CCDS46547.1 USP40 gene_id:55230|Hs108|chr2 (1247) 299 74.0 8e-13
CCDS43892.1 USP20 gene_id:10868|Hs108|chr9 ( 914) 286 71.1 4.3e-12
CCDS14370.1 USP51 gene_id:158880|Hs108|chrX ( 711) 273 68.3 2.4e-11
CCDS680.1 USP33 gene_id:23032|Hs108|chr1 ( 828) 266 66.8 8e-11
CCDS65260.1 USP27X gene_id:389856|Hs108|chrX ( 438) 262 65.8 8.4e-11
CCDS679.1 USP33 gene_id:23032|Hs108|chr1 ( 911) 266 66.8 8.6e-11
CCDS44154.2 USP24 gene_id:23358|Hs108|chr1 (2620) 272 68.3 8.7e-11
CCDS678.1 USP33 gene_id:23032|Hs108|chr1 ( 942) 266 66.8 8.9e-11
>>CCDS13752.1 USP18 gene_id:11274|Hs108|chr22 (372 aa)
initn: 2555 init1: 2555 opt: 2555 Z-score: 2990.4 bits: 562.0 E(32554): 3e-160
Smith-Waterman score: 2555; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB8 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GQTCCLNSLIQVFVMNVDFTRILKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQTCCLNSLIQVFVMNVDFTRILKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQE
310 320 330 340 350 360
370
pF1KB8 TAYLLVYMKMEC
::::::::::::
CCDS13 TAYLLVYMKMEC
370
>>CCDS41619.1 USP47 gene_id:55031|Hs108|chr11 (1287 aa)
initn: 547 init1: 228 opt: 412 Z-score: 475.6 bits: 98.5 E(32554): 3.6e-20
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:98-449)
30 40 50 60 70 80
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
: ::: : ..:: ::::.:.. :. .:
CCDS41 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
: . .. .. :.:.:. :. .: :...:.. ... . . . :::. .
CCDS41 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
: ... .... ... .. .. :: ..:: . :..:..:. : ...: .:: .
CCDS41 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
.:. . ..:.::: :.::. :.. .. ::: : :: ... :.. :.: ::..: ::..
CCDS41 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
250 260 270 280 290 300
270 280 290
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
. ..: . ::. ::.: .. . . ::: :.
CCDS41 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
310 320 330 340 350 360
300 310 320 330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
: .:: . ::::.:..: : : .::: . :.. : .
CCDS41 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
370 380 390 400 410 420
340 350 360 370
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. :::... .. :::. :.:
CCDS41 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
430 440 450 460 470 480
>>CCDS60725.1 USP47 gene_id:55031|Hs108|chr11 (1355 aa)
initn: 547 init1: 228 opt: 412 Z-score: 475.3 bits: 98.5 E(32554): 3.8e-20
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:166-517)
30 40 50 60 70 80
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
: ::: : ..:: ::::.:.. :. .:
CCDS60 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
140 150 160 170 180 190
90 100 110 120 130 140
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
: . .. .. :.:.:. :. .: :...:.. ... . . . :::. .
CCDS60 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
200 210 220 230 240 250
150 160 170 180 190 200
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
: ... .... ... .. .. :: ..:: . :..:..:. : ...: .:: .
CCDS60 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
260 270 280 290 300 310
210 220 230 240 250 260
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
.:. . ..:.::: :.::. :.. .. ::: : :: ... :.. :.: ::..: ::..
CCDS60 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
320 330 340 350 360 370
270 280 290
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
. ..: . ::. ::.: .. . . ::: :.
CCDS60 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
380 390 400 410 420 430
300 310 320 330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
: .:: . ::::.:..: : : .::: . :.. : .
CCDS60 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
440 450 460 470 480 490
340 350 360 370
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. :::... .. :::. :.:
CCDS60 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
500 510 520 530 540 550
>>CCDS81554.1 USP47 gene_id:55031|Hs108|chr11 (1375 aa)
initn: 547 init1: 228 opt: 412 Z-score: 475.2 bits: 98.5 E(32554): 3.8e-20
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:186-537)
30 40 50 60 70 80
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
: ::: : ..:: ::::.:.. :. .:
CCDS81 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
160 170 180 190 200 210
90 100 110 120 130 140
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
: . .. .. :.:.:. :. .: :...:.. ... . . . :::. .
CCDS81 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
220 230 240 250 260 270
150 160 170 180 190 200
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
: ... .... ... .. .. :: ..:: . :..:..:. : ...: .:: .
CCDS81 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
280 290 300 310 320 330
210 220 230 240 250 260
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
.:. . ..:.::: :.::. :.. .. ::: : :: ... :.. :.: ::..: ::..
CCDS81 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
340 350 360 370 380 390
270 280 290
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
. ..: . ::. ::.: .. . . ::: :.
CCDS81 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
400 410 420 430 440 450
300 310 320 330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
: .:: . ::::.:..: : : .::: . :.. : .
CCDS81 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
460 470 480 490 500 510
340 350 360 370
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. :::... .. :::. :.:
CCDS81 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
520 530 540 550 560 570
>>CCDS44084.1 USP48 gene_id:84196|Hs108|chr1 (485 aa)
initn: 287 init1: 135 opt: 359 Z-score: 420.2 bits: 86.8 E(32554): 4.4e-17
Smith-Waterman score: 359; 27.0% identity (56.7% similar) in 307 aa overlap (52-339:86-374)
30 40 50 60 70 80
pF1KB8 SPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTR
...::: :.: :: .:...::. .:... .
CCDS44 VGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQ
60 70 80 90 100 110
90 100 110 120 130
pF1KB8 IL-------KRITVPRGADEQRRSVP----FQMLLLLEKMQDSRQKAVRPLELAYCLQKC
: . . : .:.. : .. :. .:.: .. . : .. :
CCDS44 ALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKAL---
120 130 140 150 160 170
140 150 160 170 180
pF1KB8 NVPLFVQHDAAQLYLKLWNLIKDQIT-----DVHLVERLQALYTIRVKDSLICVDCAMES
.. :.:: .. . .:..: .. ::. . .: . . .: .:. ::
CCDS44 GLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNI--VQQQFCGEYAYVTVCNQCGRES
180 190 200 210 220 230
190 200 210 220 230 240
pF1KB8 SRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKL
. :.. : :.. . : : : . :.. ..: . .. ::::: .: . . ..:
CCDS44 KLLSKFYELELNI-----QGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRL
240 250 260 270 280
250 260 270 280 290 300
pF1KB8 THLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGGQY--E
:: ::...:::: . :. :. . . ::.:: :. :..::.: :
CCDS44 LSLPCTLNLQLMRFVF----DRQTGHKKKLNTYIGFSEILDME----PYVEHKGGSYVYE
290 300 310 320 330
310 320 330 340 350 360
pF1KB8 LFAVIAHVGM-ADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQETA
: ::. : :. : :::: ..... .:.:. ::: .:
CCDS44 LSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQ
340 350 360 370 380 390
370
pF1KB8 YLLVYMKMEC
CCDS44 TRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEWCIEMAEM
400 410 420 430 440 450
>>CCDS81277.1 USP48 gene_id:84196|Hs108|chr1 (983 aa)
initn: 287 init1: 135 opt: 359 Z-score: 415.4 bits: 86.9 E(32554): 8.1e-17
Smith-Waterman score: 359; 27.0% identity (56.7% similar) in 307 aa overlap (52-339:86-374)
30 40 50 60 70 80
pF1KB8 SPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTR
...::: :.: :: .:...::. .:... .
CCDS81 VGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQ
60 70 80 90 100 110
90 100 110 120 130
pF1KB8 IL-------KRITVPRGADEQRRSVP----FQMLLLLEKMQDSRQKAVRPLELAYCLQKC
: . . : .:.. : .. :. .:.: .. . : .. :
CCDS81 ALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKAL---
120 130 140 150 160 170
140 150 160 170 180
pF1KB8 NVPLFVQHDAAQLYLKLWNLIKDQIT-----DVHLVERLQALYTIRVKDSLICVDCAMES
.. :.:: .. . .:..: .. ::. . .: . . .: .:. ::
CCDS81 GLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNI--VQQQFCGEYAYVTVCNQCGRES
180 190 200 210 220 230
190 200 210 220 230 240
pF1KB8 SRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKL
. :.. : :.. . : : : . :.. ..: . .. ::::: .: . . ..:
CCDS81 KLLSKFYELELNI-----QGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRL
240 250 260 270 280
250 260 270 280 290 300
pF1KB8 THLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGGQY--E
:: ::...:::: . :. :. . . ::.:: :. :..::.: :
CCDS81 LSLPCTLNLQLMRFVF----DRQTGHKKKLNTYIGFSEILDME----PYVEHKGGSYVYE
290 300 310 320 330
310 320 330 340 350 360
pF1KB8 LFAVIAHVGM-ADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQETA
: ::. : :. : :::: ..... .:.:. ::: .:
CCDS81 LSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQ
340 350 360 370 380 390
370
pF1KB8 YLLVYMKMEC
CCDS81 TRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEWCIEMAEM
400 410 420 430 440 450
>>CCDS30623.1 USP48 gene_id:84196|Hs108|chr1 (1035 aa)
initn: 287 init1: 135 opt: 359 Z-score: 415.1 bits: 86.9 E(32554): 8.4e-17
Smith-Waterman score: 359; 27.0% identity (56.7% similar) in 307 aa overlap (52-339:86-374)
30 40 50 60 70 80
pF1KB8 SPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTR
...::: :.: :: .:...::. .:... .
CCDS30 VGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQ
60 70 80 90 100 110
90 100 110 120 130
pF1KB8 IL-------KRITVPRGADEQRRSVP----FQMLLLLEKMQDSRQKAVRPLELAYCLQKC
: . . : .:.. : .. :. .:.: .. . : .. :
CCDS30 ALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKAL---
120 130 140 150 160 170
140 150 160 170 180
pF1KB8 NVPLFVQHDAAQLYLKLWNLIKDQIT-----DVHLVERLQALYTIRVKDSLICVDCAMES
.. :.:: .. . .:..: .. ::. . .: . . .: .:. ::
CCDS30 GLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNI--VQQQFCGEYAYVTVCNQCGRES
180 190 200 210 220 230
190 200 210 220 230 240
pF1KB8 SRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKL
. :.. : :.. . : : : . :.. ..: . .. ::::: .: . . ..:
CCDS30 KLLSKFYELELNI-----QGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRL
240 250 260 270 280
250 260 270 280 290 300
pF1KB8 THLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGGQY--E
:: ::...:::: . :. :. . . ::.:: :. :..::.: :
CCDS30 LSLPCTLNLQLMRFVF----DRQTGHKKKLNTYIGFSEILDME----PYVEHKGGSYVYE
290 300 310 320 330
310 320 330 340 350 360
pF1KB8 LFAVIAHVGM-ADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQETA
: ::. : :. : :::: ..... .:.:. ::: .:
CCDS30 LSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQ
340 350 360 370 380 390
370
pF1KB8 YLLVYMKMEC
CCDS30 TRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEWCIEMAEM
400 410 420 430 440 450
>>CCDS46547.1 USP40 gene_id:55230|Hs108|chr2 (1247 aa)
initn: 193 init1: 77 opt: 299 Z-score: 343.7 bits: 74.0 E(32554): 8e-13
Smith-Waterman score: 299; 25.1% identity (55.6% similar) in 338 aa overlap (29-348:34-348)
10 20 30 40 50
pF1KB8 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLH
:: . . .. ::: .: :..
CCDS46 FLRVVFSFTMFGDLFEEEYSTVSNNQYGKGKKLKTKALEPPAPREFT-------NLSGIR
10 20 30 40 50
60 70 80 90 100
pF1KB8 NIGQTCCLNSLIQVFVMNVDFTRILKRITVPR--G-------ADEQRRSVPFQMLLLLEK
: : :: ::::.:.. .. .: . : . :. : : . : .:.:. :. .
CCDS46 NQGGTCYLNSLLQTLHFTPEFREALFSLG-PEELGLFEDKDKPDAKVRIIPLQLQRLFAQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 MQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYT
. :.:. .:. . . . :::. .: :.. .. ... . . . ::
CCDS46 LLLLDQEAASTADLTDSFGWTSNEEMRQHDVQELNRILFSALETSLVGTSGHDLIYRLYH
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 IRVKDSLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCF
. ....: .: : :. ..: : ... .:.. ::::: .. .:. . .. .
CCDS46 GTIVNQIVCKECKNVSERQEDFLDLTVAVKNVSG-----LEDALWNMYVEEEVFDCDNLY
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 -CENCGKKTRGKQVLKLTHLPQTLTIHLMRFS---IRNSQTRKI-CHSLYFPQSLDFSQI
: .: . ... . :: .:: ::. :.::. .. . .. :.. :: ....
CCDS46 HCGTCDRLVKAAKSAKLRKLPPFLTVSLLRFNFDFVKCERYKETSCYT--FPLRINLK--
240 250 260 270 280
290 300 310 320 330 340
pF1KB8 LPMKRESCDAEEQSGGQY--ELFAVIAHVGMADSGHYCVYIRNAVD--GKWFCFNDSNIC
:. :. : . .: .::.:: : : .::: :::.. :: :.: ....
CCDS46 -PF----CEQSELDDLEYIYDLFSVIIHKGGCYGGHYHVYIKD-VDHLGNWQFQEEKSKP
290 300 310 320 330 340
350 360 370
pF1KB8 LVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC
:. .:.:
CCDS46 DVNLKDLQSEEEIDHPLMILKAILLEENNLIPVDQLGQKLLKKIGISWNKKYRKQHGPLR
350 360 370 380 390 400
>>CCDS43892.1 USP20 gene_id:10868|Hs108|chr9 (914 aa)
initn: 261 init1: 153 opt: 286 Z-score: 330.6 bits: 71.1 E(32554): 4.3e-12
Smith-Waterman score: 286; 34.9% identity (57.7% similar) in 149 aa overlap (205-352:535-677)
180 190 200 210 220 230
pF1KB8 SLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCG
:. :::: : :: ::.. . :: :
CCDS43 DSYAAQGWLAFIVEYIRRFVVSCTPSWFWGPVVTLEDCLAAFFAADELKGDNMYSCERCK
510 520 530 540 550 560
240 250 260 270 280 290
pF1KB8 KKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFP-QSLDFSQILPMKRESCD
: : . :. .::. : ::: :: . . :: . :: ..::. :. . :
CCDS43 KLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLR---PFLAKECT
570 580 590 600 610 620
300 310 320 330 340 350
pF1KB8 AEEQSGGQYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGN
.. . :.:..:: : : : :::: .: .:...:.:. :.:. . : .: . :
CCDS43 SQITT---YDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGY
630 640 650 660 670
360 370
pF1KB8 PNYHWQETAYLLVYMKMEC
CCDS43 VLFYRKSSEEAMRERQQVVSLAAMREPSLLRFYVSREWLNKFNTFAEPGPITNQTFLCSH
680 690 700 710 720 730
>>CCDS14370.1 USP51 gene_id:158880|Hs108|chrX (711 aa)
initn: 283 init1: 103 opt: 273 Z-score: 317.0 bits: 68.3 E(32554): 2.4e-11
Smith-Waterman score: 309; 23.8% identity (51.6% similar) in 382 aa overlap (13-352:322-698)
10 20 30 40
pF1KB8 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPR
:.... . .. . : ::.. .. . . .
CCDS14 VYDKDIEQIAKETKEKILRLLTSTSTDVSHQQFMTSGFEDKQSTCETKEQEPKLVKPKKK
300 310 320 330 340 350
50 60 70 80 90
pF1KB8 ERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFV---MNVDFTRILKRITVPRGADEQRRSV
.: .. : :: :: :.:.:: .: ..:... . :: :. . .
CCDS14 RRKKSV-YTVGLRGLINLGNTCFMNCIVQALTHIPLLKDFFLSDKHKCI---MTSPSLCL
360 370 380 390 400
100 110 120 130 140 150
pF1KB8 PFQMLLLLEKMQDSRQKAVRPLELAYCL--QKCNVPLFVQHDAAQLYLKLWNLIKDQITD
.: :.. : .. . : .: . . . .. . :.:: .. . . .... . :
CCDS14 VCEMSSLFHAMYSGSRTPHIPYKLLHLIWIHAEHLAGYRQQDAHEFLIAILDVLHRHSKD
410 420 430 440 450 460
160 170 180 190 200
pF1KB8 VHLVER----------LQALYTIRVKDSLICVDCAMESSRNSSM----LTLPLSLFDVDS
.. .. ..: ..... : : :. . : :: : ::
CCDS14 DSGGQEANNPNCCNCIIDQIFTGGLQSDVTCQACHSVSTTIDPCWDISLDLPGSCATFDS
470 480 490 500 510 520
210 220 230 240
pF1KB8 K-P---------------LKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTH
. : . .: : :. : .:..:.:..: :..: . .. . : . .
CCDS14 QNPERADSTVSRDDHIPGIPSLTDCLQWFTRPEHLGSSAKIKCNSCQSYQESTKQLTMKK
530 540 550 560 570 580
250 260 270 280 290 300
pF1KB8 LPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQ-------SGG
:: . .:: :: ..: ::: . :: ::.. .: .:: : : . .
CCDS14 LPIVACFHLKRFEHVGKQRRKINTFISFPLELDMTPFLASTKESRMKEGQPPTDCVPNEN
590 600 610 620 630 640
310 320 330 340 350 360
pF1KB8 QYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQE
.: ::::: : : .:::: .::. : .:: .:. : .. ::. . :
CCDS14 KYSLFAVINHHGTLESGHYTSFIRQQKD-QWFSCDDAIITKATIEDLLYSEGYLLFYHKQ
650 660 670 680 690 700
370
pF1KB8 TAYLLVYMKMEC
CCDS14 GLEKD
710
372 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:59:36 2016 done: Fri Nov 4 14:59:36 2016
Total Scan time: 2.820 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]