FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8720, 720 aa
  1>>>pF1KB8720 720 - 720 aa - 720 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7290+/- 0.001; mu= -4.4464+/- 0.060
 mean_var=279.0341+/-57.777, 0's: 0 Z-trim(113.7): 31  B-trim: 134 in 1/51
 Lambda= 0.076780
 statistics sampled from 14251 (14273) to 14251 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.438), width:  16
 Scan time:  4.940

The best scores are:                                      opt bits E(32554)
CCDS14074.2 GTSE1 gene_id:51512|Hs108|chr22        ( 739) 4752 540.1 4.6e-153


>>CCDS14074.2 GTSE1 gene_id:51512|Hs108|chr22             (739 aa)
 initn: 4752 init1: 4752 opt: 4752  Z-score: 2861.4  bits: 540.1 E(32554): 4.6e-153
Smith-Waterman score: 4752; 99.9% identity (99.9% similar) in 720 aa overlap (1-720:20-739)

                                  10        20        30        40 
pF1KB8                    MDDPKKEDILLLADEKFDFDLSLSSSSANEDDEVFFGPFGH
                          :::::::::::::::::::::::::::::::::::::::::
CCDS14 MEGGGGRDEPSACRAGDVNMDDPKKEDILLLADEKFDFDLSLSSSSANEDDEVFFGPFGH
               10        20        30        40        50        60

              50        60        70        80        90       100 
pF1KB8 KERCIAASLELNNPVPEQPPLPTSESPFAWSPLAGEKFVEVYKEAHLLALHIESSSRNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KERCIAASLELNNPVPEQPPLPTSESPFAWSPLAGEKFVEVYKEAHLLALHIESSSRNQA
               70        80        90       100       110       120

             110       120       130       140       150       160 
pF1KB8 AQAAKPEDPRSQGVERFIQESKLKINLFEKEKEMKKSPTSLKRETYYLSDSPLLGPPVGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AQAAKPEDPRSQGVERFIQESKLKINLFEKEKEMKKSPTSLKRETYYLSDSPLLGPPVGE
              130       140       150       160       170       180

             170       180       190       200       210       220 
pF1KB8 PRLLASSPALPSSGAQARLTRAPGPPHSAHALPRESCTAHAASQAATQRKPGTKLLLPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PRLLASSPALPSSGAQARLTRAPGPPHSAHALPRESCTAHAASQAATQRKPGTKLLLPRA
              190       200       210       220       230       240

             230       240       250       260       270       280 
pF1KB8 ASVRGRSIPGAAEKPKKEIPASPSRTKIPAEKESHRDVLPDKPAPGAVNVPAAGSHLGQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASVRGRSIPGAAEKPKKEIPASPSRTKIPAEKESHRDVLPDKPAPGAVNVPAAGSHLGQG
              250       260       270       280       290       300

             290       300       310       320       330       340 
pF1KB8 KRAIPVPNKLGLKKTLLKAPGSTSNLARKSSSGPVWSGASSACTSPAVGKAKSSEFASIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KRAIPVPNKLGLKKTLLKAPGSTSNLARKSSSGPVWSGASSACTSPAVGKAKSSEFASIP
              310       320       330       340       350       360

             350       360       370       380       390       400 
pF1KB8 ANSSRPLSNISKSGRMGPAMLRPALPAGPVGASSWQAKRVDVSELAAEQLTAPPSASPTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ANSSRPLSNISKSGRMGPAMLRPALPAGPVGASSWQAKRVDVSELAAEQLTAPPSASPTQ
              370       380       390       400       410       420

             410       420       430       440       450       460 
pF1KB8 PQTPEGGGQWLNSSCAWSESSQLNKTRSIRRRDSCLNSKTKVMPTPTNQFKIPKFSIGDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQTPEGGGQWLNSSCAWSESSQLNKTRSIRRRDSCLNSKTKVMPTPTNQFKIPKFSIGDS
              430       440       450       460       470       480

             470       480       490       500       510       520 
pF1KB8 PDSSTPKLSRAQRPQSCTSVGRVTVHSTPVRRSSGPAPQSLLSARRVSALPTPASRRCSG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
CCDS14 PDSSTPKLSRAQRPQSCTSVGRVTVHSTPVRRSSGPAPQSLLSAWRVSALPTPASRRCSG
              490       500       510       520       530       540

             530       540       550       560       570       580 
pF1KB8 LPPMTPKTMPRAVGSPLCVPARRRSSEPRKNSAMRTEPTRESNRKTDSRLVDVSPDRGSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPPMTPKTMPRAVGSPLCVPARRRSSEPRKNSAMRTEPTRESNRKTDSRLVDVSPDRGSP
              550       560       570       580       590       600

             590       600       610       620       630       640 
pF1KB8 PSRVPQALNFSPEESDSTFSKSTATEVAREEAKPGGDAAPSEALLVDIKLEPLAVTPDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PSRVPQALNFSPEESDSTFSKSTATEVAREEAKPGGDAAPSEALLVDIKLEPLAVTPDAA
              610       620       630       640       650       660

             650       660       670       680       690       700 
pF1KB8 SQPLIDLPLIDFCDTPEAHVAVGSESRPLIDLMTNTPDMNKNVAKPSPVVGQLIDLSSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SQPLIDLPLIDFCDTPEAHVAVGSESRPLIDLMTNTPDMNKNVAKPSPVVGQLIDLSSPL
              670       680       690       700       710       720

             710       720
pF1KB8 IQLSPEADKENVDSPLLKF
       :::::::::::::::::::
CCDS14 IQLSPEADKENVDSPLLKF
              730         




720 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:54:01 2016 done: Fri Nov  4 14:54:01 2016
 Total Scan time:  4.940 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]