Result of FASTA (ccds) for
pF1KB8718
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8718, 605 aa
1>>>pF1KB8718 605 - 605 aa - 605 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0373+/-0.000971; mu= 14.9159+/- 0.058
mean_var=72.2728+/-14.753, 0's: 0 Z-trim(104.7): 42 B-trim: 0 in 0/52
Lambda= 0.150864
statistics sampled from 8023 (8049) to 8023 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.247), width: 16
Scan time: 3.280
The best scores are: opt bits E(32554)
CCDS13786.1 AIFM3 gene_id:150209|Hs108|chr22 ( 605) 4007 881.8 0
CCDS33605.1 AIFM3 gene_id:150209|Hs108|chr22 ( 598) 3939 867.0 0
CCDS54503.1 AIFM3 gene_id:150209|Hs108|chr22 ( 604) 3917 862.2 0
CCDS14619.1 AIFM1 gene_id:9131|Hs108|chrX ( 609) 285 71.7 3.1e-12
CCDS14618.1 AIFM1 gene_id:9131|Hs108|chrX ( 613) 285 71.7 3.1e-12
>>CCDS13786.1 AIFM3 gene_id:150209|Hs108|chr22 (605 aa)
initn: 4007 init1: 4007 opt: 4007 Z-score: 4711.2 bits: 881.8 E(32554): 0
Smith-Waterman score: 4007; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605)
10 20 30 40 50 60
pF1KB8 MGGCFSKPKPVELKIEVVLPEKERGKEELSASGKGSPRAYQGNGTARHFHTEERLSTPHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGGCFSKPKPVELKIEVVLPEKERGKEELSASGKGSPRAYQGNGTARHFHTEERLSTPHP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YPSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YPSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYVRASKQALQLQRRTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYVRASKQALQLQRRTKV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 MAKCISPSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAKCISPSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLDTQPEQLALRPKEFFRAYGIEVLTEAQVVTVDVRTKKVVFKDGFKLEYSKLLLAPGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLDTQPEQLALRPKEFFRAYGIEVLTEAQVVTVDVRTKKVVFKDGFKLEYSKLLLAPGSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PKTLSCKGKEVENVFTIRTPEDANRVVRLARGRNVVVVGAGFLGMEVAAYLTEKAHSVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PKTLSCKGKEVENVFTIRTPEDANRVVRLARGRNVVVVGAGFLGMEVAAYLTEKAHSVSV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 VELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKSSKVVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKSSKVVRA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 DVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTNVPGVFAAGDAVTFPLAWRNNRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTNVPGVFAAGDAVTFPLAWRNNRK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 VNIPHWQMAHAQGRVAAQNMLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDVIIQGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VNIPHWQMAHAQGRVAAQNMLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDVIIQGDL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 EELKFVAFYTKGDEVIAVASMNYDPIVSKVAEVLASGRAIRKREVELFVLHSKTGDMSWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EELKFVAFYTKGDEVIAVASMNYDPIVSKVAEVLASGRAIRKREVELFVLHSKTGDMSWL
550 560 570 580 590 600
pF1KB8 TGKGS
:::::
CCDS13 TGKGS
>>CCDS33605.1 AIFM3 gene_id:150209|Hs108|chr22 (598 aa)
initn: 3878 init1: 3878 opt: 3939 Z-score: 4631.3 bits: 867.0 E(32554): 0
Smith-Waterman score: 3939; 98.8% identity (98.8% similar) in 605 aa overlap (1-605:1-598)
10 20 30 40 50 60
pF1KB8 MGGCFSKPKPVELKIEVVLPEKERGKEELSASGKGSPRAYQGNGTARHFHTEERLSTPHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGGCFSKPKPVELKIEVVLPEKERGKEELSASGKGSPRAYQGNGTARHFHTEERLSTPHP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YPSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YPSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYVRASKQALQLQRRTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYVRASKQALQLQRRTKV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 MAKCISPSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAKCISPSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLDTQPEQLALRPKEFFRAYGIEVLTEAQVVTVDVRTKKVVFKDGFKLEYSKLLLAPGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLDTQPEQLALRPKEFFRAYGIEVLTEAQVVTVDVRTKKVVFKDGFKLEYSKLLLAPGSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PKTLSCKGKEVENVFTIRTPEDANRVVRLARGRNVVVVGAGFLGMEVAAYLTEKAHSVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PKTLSCKGKEVENVFTIRTPEDANRVVRLARGRNVVVVGAGFLGMEVAAYLTEKAHSVSV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 VELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKSSKVVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKSSKVVRA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 DVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTNVPGVFAAGDAVTFPLAWRNNRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTNVPGVFAAGDAVTFPLAWRNNRK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 VNIPHWQMAHAQGRVAAQNMLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDVIIQGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VNIPHWQMAHAQGRVAAQNMLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDVIIQGDL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 EELKFVAFYTKGDEVIAVASMNYDPIVSKVAEVLASGRAIRKREVELFVLHSKTGDMSWL
:::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS33 EELKFVAFYTKGDEVIAVASMNYDPIVSKVAEVLASGRAIRKREVE-------TGDMSWL
550 560 570 580 590
pF1KB8 TGKGS
:::::
CCDS33 TGKGS
>>CCDS54503.1 AIFM3 gene_id:150209|Hs108|chr22 (604 aa)
initn: 3864 init1: 3797 opt: 3917 Z-score: 4605.4 bits: 862.2 E(32554): 0
Smith-Waterman score: 3917; 97.9% identity (97.9% similar) in 611 aa overlap (1-605:1-604)
10 20 30 40 50
pF1KB8 MGGCFSKPKP------VELKIEVVLPEKERGKEELSASGKGSPRAYQGNGTARHFHTEER
:::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGGCFSKPKPGAALPTVELKIEVVLPEKERGKEELSASGKGSPRAYQGNGTARHFHTEER
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LSTPHPYPSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LSTPHPYPSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 PLVKGVLSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYVRASKQALQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PLVKGVLSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYVRASKQALQL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 QRRTKVMAKCISPSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QRRTKVMAKCISPSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 RPKLSKSLDTQPEQLALRPKEFFRAYGIEVLTEAQVVTVDVRTKKVVFKDGFKLEYSKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RPKLSKSLDTQPEQLALRPKEFFRAYGIEVLTEAQVVTVDVRTKKVVFKDGFKLEYSKLL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 LAPGSSPKTLSCKGKEVENVFTIRTPEDANRVVRLARGRNVVVVGAGFLGMEVAAYLTEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LAPGSSPKTLSCKGKEVENVFTIRTPEDANRVVRLARGRNVVVVGAGFLGMEVAAYLTEK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB8 AHSVSVVELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AHSVSVVELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB8 SKVVRADVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTNVPGVFAAGDAVTFPLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SKVVRADVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTNVPGVFAAGDAVTFPLA
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB8 WRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB8 IIQGDLEELKFVAFYTKGDEVIAVASMNYDPIVSKVAEVLASGRAIRKREVELFVLHSKT
:::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS54 IIQGDLEELKFVAFYTKGDEVIAVASMNYDPIVSKVAEVLASGRAIRKREVE-------T
550 560 570 580 590
600
pF1KB8 GDMSWLTGKGS
:::::::::::
CCDS54 GDMSWLTGKGS
600
>>CCDS14619.1 AIFM1 gene_id:9131|Hs108|chrX (609 aa)
initn: 234 init1: 127 opt: 285 Z-score: 333.1 bits: 71.7 E(32554): 3.1e-12
Smith-Waterman score: 398; 26.7% identity (56.6% similar) in 424 aa overlap (147-528:74-492)
120 130 140 150 160 170
pF1KB8 VKGVLSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYV-RASKQALQLQ
: . ... : :: : : : .: .
CCDS14 SPSRSLASTGASGKDGSNLVYFLIVGATVTGAGVYYAYKTMKEDEKRYNERISGLGLTPE
50 60 70 80 90 100
180 190 200 210 220 230
pF1KB8 RRTKVMAKCIS-----PSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRH
.. : : : :. : . :..:.:.:... :...: . . :... . : .
CCDS14 QKQKKAALSASEGEEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE
110 120 130 140 150 160
240 250 260
pF1KB8 LPYDRPKLSKSL-----------------DTQPEQLALRPKEFFRAY---------GIEV
::: :: ::: : . . ... ..: :. . :. :
CCDS14 LPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAV
170 180 190 200 210 220
270 280 290 300 310 320
pF1KB8 LTEAQVVTVDVRTKKVVFKDGFKLEYSKLLLAPGSSPKTLSC---KGKEVENVFTI-RTP
:: .:: .::: . : ..:: .. : : :.: :..:..:: : ::.. :. :
CCDS14 LTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKI
230 240 250 260 270 280
330 340 350 360 370
pF1KB8 EDANRVVRLARG-RNVVVVGAGFLGMEVAAYLTEKAHSVS--VVEL--EETPFRRFLGER
: . ...: ......:.:::: :.: : .::.... :..: :. . ..: :
CCDS14 GDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEY
290 300 310 320 330 340
380 390 400 410 420 430
pF1KB8 VGRALMKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGF
.. :. . . :: . .. :. . . ::: . ::... :..: :...: : . .
CCDS14 LSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLL-IKLKDGRKVETDHIVAAVGLEPNVEL
350 360 370 380 390 400
440 450 460 470 480 490
pF1KB8 LRQSGIGLDSR-GFIPVNKMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGR
. .:. .:: : . :: .:. ....::::. : . :.:. : . : ..::
CCDS14 AKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGR
410 420 430 440 450
500 510 520 530 540 550
pF1KB8 VAAQNMLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDVIIQGDLEELKFVAFYTKGDE
.:..:: . . ..:. . : .. : . :
CCDS14 LAGENMTGAAKPYWHQSMFWSDL-GPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATE
460 470 480 490 500 510
560 570 580 590 600
pF1KB8 VIAVASMNYDPIVSKVAEVLASGRAIRKREVELFVLHSKTGDMSWLTGKGS
CCDS14 QSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIF
520 530 540 550 560 570
>>CCDS14618.1 AIFM1 gene_id:9131|Hs108|chrX (613 aa)
initn: 234 init1: 127 opt: 285 Z-score: 333.0 bits: 71.7 E(32554): 3.1e-12
Smith-Waterman score: 396; 26.7% identity (57.0% similar) in 419 aa overlap (152-528:83-496)
130 140 150 160 170 180
pF1KB8 SRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYV-RASKQALQLQRRTKV
. ... : :: : : : .: ... :
CCDS14 QMASSGASGGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKK
60 70 80 90 100 110
190 200 210 220 230
pF1KB8 MAKCIS-----PSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDR
: : :. : . :..:.:.:... :...: . . :... . : .::: :
CCDS14 AALSASEGEEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR
120 130 140 150 160 170
240 250 260
pF1KB8 PKLSKSL-----------------DTQPEQLALRPKEFFRAY---------GIEVLTEAQ
: ::: : . . ... ..: :. . :. ::: .
CCDS14 PPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKK
180 190 200 210 220 230
270 280 290 300 310 320
pF1KB8 VVTVDVRTKKVVFKDGFKLEYSKLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANR
:: .::: . : ..:: .. : : :.: :..:..:: : ::.. :. : :
CCDS14 VVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRS
240 250 260 270 280 290
330 340 350 360 370 380
pF1KB8 VVRLARG-RNVVVVGAGFLGMEVAAYLTEKAHSVS--VVEL--EETPFRRFLGERVGRAL
. ...: ......:.:::: :.: : .::.... :..: :. . ..: : ..
CCDS14 LEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWT
300 310 320 330 340 350
390 400 410 420 430 440
pF1KB8 MKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSG
:. . . :: . .. :. . . ::: . ::... :..: :...: : . . . .:
CCDS14 MEKVRREGVKVMPNAIVQSVGVSSGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGG
360 370 380 390 400 410
450 460 470 480 490
pF1KB8 IGLDSR-GFIPVNKMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQN
. .:: : . :: .:. ....::::. : . :.:. : . : ..::.:..:
CCDS14 LEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGEN
420 430 440 450 460
500 510 520 530 540 550
pF1KB8 MLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDVIIQGDLEELKFVAFYTKGDEVIAVA
: . . ..:. . : .. : . :
CCDS14 MTGAAKPYWHQSMFWSDL-GPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTG
470 480 490 500 510 520
605 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:52:52 2016 done: Fri Nov 4 14:52:52 2016
Total Scan time: 3.280 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]