FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8716, 543 aa
  1>>>pF1KB8716 543 - 543 aa - 543 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7886+/-0.000961; mu= 0.1820+/- 0.058
 mean_var=278.8232+/-56.770, 0's: 0 Z-trim(114.4): 13  B-trim: 160 in 1/54
 Lambda= 0.076809
 statistics sampled from 14981 (14990) to 14981 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.46), width:  16
 Scan time:  4.080

The best scores are:                                      opt bits E(32554)
CCDS14085.2 PANX2 gene_id:56666|Hs108|chr22        ( 677) 3642 416.9 3.7e-116
CCDS54544.1 PANX2 gene_id:56666|Hs108|chr22        ( 643) 3339 383.3 4.6e-106


>>CCDS14085.2 PANX2 gene_id:56666|Hs108|chr22             (677 aa)
 initn: 3642 init1: 3642 opt: 3642  Z-score: 2198.8  bits: 416.9 E(32554): 3.7e-116
Smith-Waterman score: 3642; 100.0% identity (100.0% similar) in 543 aa overlap (1-543:135-677)

                                             10        20        30
pF1KB8                               MYVPALGWEFLASTRLTSELNFLLQEIDNC
                                     ::::::::::::::::::::::::::::::
CCDS14 DALPGVDASLWPSLFEHKFLPYALLAFAAIMYVPALGWEFLASTRLTSELNFLLQEIDNC
          110       120       130       140       150       160    

               40        50        60        70        80        90
pF1KB8 YHRAAEGRAPKIEKQIQSKGPGITEREKREIIENAEKEKSPEQNLFEKYLERRGRSNFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YHRAAEGRAPKIEKQIQSKGPGITEREKREIIENAEKEKSPEQNLFEKYLERRGRSNFLA
          170       180       190       200       210       220    

              100       110       120       130       140       150
pF1KB8 KLYLARHVLILLLSAVPISYLCTYYATQKQNEFTCALGASPDGAAGAGPAVRVSCKLPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KLYLARHVLILLLSAVPISYLCTYYATQKQNEFTCALGASPDGAAGAGPAVRVSCKLPSV
          230       240       250       260       270       280    

              160       170       180       190       200       210
pF1KB8 QLQRIIAGVDIVLLCVMNLIILVNLIHLFIFRKSNFIFDKLHKVGIKTRRQWRRSQFCDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QLQRIIAGVDIVLLCVMNLIILVNLIHLFIFRKSNFIFDKLHKVGIKTRRQWRRSQFCDI
          290       300       310       320       330       340    

              220       230       240       250       260       270
pF1KB8 NILAMFCNENRDHIKSLNRLDFITNESDLMYDNVVRQLLAALAQSNHDATPTVRDSGVQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NILAMFCNENRDHIKSLNRLDFITNESDLMYDNVVRQLLAALAQSNHDATPTVRDSGVQT
          350       360       370       380       390       400    

              280       290       300       310       320       330
pF1KB8 VDPSANPAEPDGAAEPPVVKRPRKKMKWIPTSNPLPQPFKEPLAIMRVENSKAEKPKPAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VDPSANPAEPDGAAEPPVVKRPRKKMKWIPTSNPLPQPFKEPLAIMRVENSKAEKPKPAR
          410       420       430       440       450       460    

              340       350       360       370       380       390
pF1KB8 RKTATDTLIAPLLDRSAHHYKGGGGDPGPGPAPAPAPPPAPDKKHARHFSLDVHPYILGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RKTATDTLIAPLLDRSAHHYKGGGGDPGPGPAPAPAPPPAPDKKHARHFSLDVHPYILGT
          470       480       490       500       510       520    

              400       410       420       430       440       450
pF1KB8 KKAKAEAVPAALPASRSQEGGFLSQAEDCGLGLAPAPIKDAPLPEKEIPYPTEPARAGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKAKAEAVPAALPASRSQEGGFLSQAEDCGLGLAPAPIKDAPLPEKEIPYPTEPARAGLP
          530       540       550       560       570       580    

              460       470       480       490       500       510
pF1KB8 SGGPFHVRSPPAAPAVAPLTPASLGKAEPLTILSRNATHPLLHINTLYEAREEEDGGPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SGGPFHVRSPPAAPAVAPLTPASLGKAEPLTILSRNATHPLLHINTLYEAREEEDGGPRL
          590       600       610       620       630       640    

              520       530       540   
pF1KB8 PQDVGDLIAIPAPQQILIATFDEPRTVVSTVEF
       :::::::::::::::::::::::::::::::::
CCDS14 PQDVGDLIAIPAPQQILIATFDEPRTVVSTVEF
          650       660       670       

>>CCDS54544.1 PANX2 gene_id:56666|Hs108|chr22             (643 aa)
 initn: 3339 init1: 3339 opt: 3339  Z-score: 2017.7  bits: 383.3 E(32554): 4.6e-106
Smith-Waterman score: 3339; 100.0% identity (100.0% similar) in 497 aa overlap (1-497:135-631)

                                             10        20        30
pF1KB8                               MYVPALGWEFLASTRLTSELNFLLQEIDNC
                                     ::::::::::::::::::::::::::::::
CCDS54 DALPGVDASLWPSLFEHKFLPYALLAFAAIMYVPALGWEFLASTRLTSELNFLLQEIDNC
          110       120       130       140       150       160    

               40        50        60        70        80        90
pF1KB8 YHRAAEGRAPKIEKQIQSKGPGITEREKREIIENAEKEKSPEQNLFEKYLERRGRSNFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YHRAAEGRAPKIEKQIQSKGPGITEREKREIIENAEKEKSPEQNLFEKYLERRGRSNFLA
          170       180       190       200       210       220    

              100       110       120       130       140       150
pF1KB8 KLYLARHVLILLLSAVPISYLCTYYATQKQNEFTCALGASPDGAAGAGPAVRVSCKLPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KLYLARHVLILLLSAVPISYLCTYYATQKQNEFTCALGASPDGAAGAGPAVRVSCKLPSV
          230       240       250       260       270       280    

              160       170       180       190       200       210
pF1KB8 QLQRIIAGVDIVLLCVMNLIILVNLIHLFIFRKSNFIFDKLHKVGIKTRRQWRRSQFCDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QLQRIIAGVDIVLLCVMNLIILVNLIHLFIFRKSNFIFDKLHKVGIKTRRQWRRSQFCDI
          290       300       310       320       330       340    

              220       230       240       250       260       270
pF1KB8 NILAMFCNENRDHIKSLNRLDFITNESDLMYDNVVRQLLAALAQSNHDATPTVRDSGVQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NILAMFCNENRDHIKSLNRLDFITNESDLMYDNVVRQLLAALAQSNHDATPTVRDSGVQT
          350       360       370       380       390       400    

              280       290       300       310       320       330
pF1KB8 VDPSANPAEPDGAAEPPVVKRPRKKMKWIPTSNPLPQPFKEPLAIMRVENSKAEKPKPAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VDPSANPAEPDGAAEPPVVKRPRKKMKWIPTSNPLPQPFKEPLAIMRVENSKAEKPKPAR
          410       420       430       440       450       460    

              340       350       360       370       380       390
pF1KB8 RKTATDTLIAPLLDRSAHHYKGGGGDPGPGPAPAPAPPPAPDKKHARHFSLDVHPYILGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RKTATDTLIAPLLDRSAHHYKGGGGDPGPGPAPAPAPPPAPDKKHARHFSLDVHPYILGT
          470       480       490       500       510       520    

              400       410       420       430       440       450
pF1KB8 KKAKAEAVPAALPASRSQEGGFLSQAEDCGLGLAPAPIKDAPLPEKEIPYPTEPARAGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KKAKAEAVPAALPASRSQEGGFLSQAEDCGLGLAPAPIKDAPLPEKEIPYPTEPARAGLP
          530       540       550       560       570       580    

              460       470       480       490       500       510
pF1KB8 SGGPFHVRSPPAAPAVAPLTPASLGKAEPLTILSRNATHPLLHINTLYEAREEEDGGPRL
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS54 SGGPFHVRSPPAAPAVAPLTPASLGKAEPLTILSRNATHPLLHINTLSSSPPSTSRERS 
          590       600       610       620       630       640    

              520       530       540   
pF1KB8 PQDVGDLIAIPAPQQILIATFDEPRTVVSTVEF




543 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:51:44 2016 done: Fri Nov  4 14:51:45 2016
 Total Scan time:  4.080 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]