FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8715, 386 aa
  1>>>pF1KB8715 386 - 386 aa - 386 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2589+/-0.000736; mu= 9.6446+/- 0.044
 mean_var=144.5716+/-29.782, 0's: 0 Z-trim(115.4): 7  B-trim: 462 in 1/51
 Lambda= 0.106668
 statistics sampled from 15992 (15998) to 15992 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.491), width:  16
 Scan time:  3.760

The best scores are:                                      opt bits E(32554)
CCDS13850.1 RHBDD3 gene_id:25807|Hs108|chr22       ( 386) 2653 419.2 3.2e-117


>>CCDS13850.1 RHBDD3 gene_id:25807|Hs108|chr22            (386 aa)
 initn: 2653 init1: 2653 opt: 2653  Z-score: 2218.0  bits: 419.2 E(32554): 3.2e-117
Smith-Waterman score: 2653; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)

               10        20        30        40        50        60
pF1KB8 MHARGPHGQLSPALPLASSVLMLLMSTLWLVGAGPGLVLAPELLLDPWQVHRLLTHALGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MHARGPHGQLSPALPLASSVLMLLMSTLWLVGAGPGLVLAPELLLDPWQVHRLLTHALGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAGLGLSSAAGSCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAGLGLSSAAGSCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YMPVHLAMLAGEGHRPRRPRGALPPWLSPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YMPVHLAMLAGEGHRPRRPRGALPPWLSPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GAFRWLEPSERRLQVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAGVRPPIPGPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GAFRWLEPSERRLQVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAGVRPPIPGPPY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 VASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 IQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTEQAVVALAATGRVEGAVSLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTEQAVVALAATGRVEGAVSLLV
              310       320       330       340       350       360

              370       380      
pF1KB8 GGQVGTETLVTHGKGGPAHSEGPGPP
       ::::::::::::::::::::::::::
CCDS13 GGQVGTETLVTHGKGGPAHSEGPGPP
              370       380      




386 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:51:09 2016 done: Fri Nov  4 14:51:09 2016
 Total Scan time:  3.760 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]