FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8714, 443 aa
  1>>>pF1KB8714 443 - 443 aa - 443 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.3988+/-0.00121; mu= -9.0789+/- 0.073
 mean_var=670.1725+/-136.184, 0's: 0 Z-trim(117.0): 158  B-trim: 0 in 0/55
 Lambda= 0.049543
 statistics sampled from 17545 (17698) to 17545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.544), width:  16
 Scan time:  3.910

The best scores are:                                      opt bits E(32554)
CCDS33630.1 EMID1 gene_id:129080|Hs108|chr22       ( 443) 3265 247.9 1.5e-65


>>CCDS33630.1 EMID1 gene_id:129080|Hs108|chr22            (443 aa)
 initn: 3265 init1: 3265 opt: 3265  Z-score: 1290.3  bits: 247.9 E(32554): 1.5e-65
Smith-Waterman score: 3265; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)

               10        20        30        40        50        60
pF1KB8 MGGPRAWALLCLGLLLPGGGAAWSIGAAPFSGRRNWCSYVVTRTISCHVQNGTYLQRVLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGGPRAWALLCLGLLLPGGGAAWSIGAAPFSGRRNWCSYVVTRTISCHVQNGTYLQRVLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NCPWPMSCPGSSYRTVVRPTYKVMYKIVTAREWRCCPGHSGVSCEEVAASSASLEPMWSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NCPWPMSCPGSSYRTVVRPTYKVMYKIVTAREWRCCPGHSGVSCEEVAASSASLEPMWSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 STMRRMALRPTAFSGCLNCSKVSELTERLKVLEAKMTMLTVIEQPVPPTPATPEDPAPLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 STMRRMALRPTAFSGCLNCSKVSELTERLKVLEAKMTMLTVIEQPVPPTPATPEDPAPLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGMRGPPGPQGPPGSPGRAGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGMRGPPGPQGPPGSPGRAGAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNTFTETNNHWPQGPTGPPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNTFTETNNHWPQGPTGPPGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PGPMGPPGPPGPTGVPGSPGHIGPPGPTGPKGISGHPGEKGERGLRGEPGPQGSAGQRGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PGPMGPPGPPGPTGVPGSPGHIGPPGPTGPKGISGHPGEKGERGLRGEPGPQGSAGQRGE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 PGPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPELGSGAGPAGTGTPSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PGPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPELGSGAGPAGTGTPSLL
              370       380       390       400       410       420

              430       440   
pF1KB8 RGKRGGHATNYRIVAPRSRDERG
       :::::::::::::::::::::::
CCDS33 RGKRGGHATNYRIVAPRSRDERG
              430       440   




443 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:50:03 2016 done: Fri Nov  4 14:50:03 2016
 Total Scan time:  3.910 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]