FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8713, 309 aa
  1>>>pF1KB8713 309 - 309 aa - 309 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.3311+/-0.00126; mu= -9.5672+/- 0.076
 mean_var=429.7301+/-90.040, 0's: 0 Z-trim(112.0): 42  B-trim: 0 in 0/54
 Lambda= 0.061869
 statistics sampled from 12803 (12830) to 12803 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.394), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS14029.1 WBP2NL gene_id:164684|Hs108|chr22      ( 309) 2139 204.7 7.4e-53


>>CCDS14029.1 WBP2NL gene_id:164684|Hs108|chr22           (309 aa)
 initn: 2139 init1: 2139 opt: 2139  Z-score: 1062.4  bits: 204.7 E(32554): 7.4e-53
Smith-Waterman score: 2139; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KB8 MAVNQSHTENRRGALIPNGESLLKRSPNVELSFPQRSEGSNVFSGRKTGTLFLTSYRVIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAVNQSHTENRRGALIPNGESLLKRSPNVELSFPQRSEGSNVFSGRKTGTLFLTSYRVIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ITSCSISDPMLSFMMPFDLMTNLTVEQPVFAANFIKGTIQAAPYGGWEGQATFKLVFRNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ITSCSISDPMLSFMMPFDLMTNLTVEQPVFAANFIKGTIQAAPYGGWEGQATFKLVFRNG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DAIEFAQLMVKAASAAARGFPLRTLNDWFSSMGIYVITGEGNMCTPQMPCSVIVYGAPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DAIEFAQLMVKAASAAARGFPLRTLNDWFSSMGIYVITGEGNMCTPQMPCSVIVYGAPPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GYGAPPPGYGAPPAGYGAQPVGNEGPPVGYRASPVRYGAPPLGYGAPPAGYGAPPLGYGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GYGAPPPGYGAPPAGYGAQPVGNEGPPVGYRASPVRYGAPPLGYGAPPAGYGAPPLGYGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PPLGYGTPPLGYGAPPLGYGAPPAGNEGPPAGYRASPAGSGARPQESTAAQAPENEASLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PPLGYGTPPLGYGAPPLGYGAPPAGNEGPPAGYRASPAGSGARPQESTAAQAPENEASLP
              250       260       270       280       290       300

                
pF1KB8 SASSSQVHS
       :::::::::
CCDS14 SASSSQVHS
                




309 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:49:28 2016 done: Fri Nov  4 14:49:28 2016
 Total Scan time:  2.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]