FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8702, 371 aa
  1>>>pF1KB8702 371 - 371 aa - 371 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7713+/-0.000325; mu= -0.6255+/- 0.021
 mean_var=295.3392+/-60.148, 0's: 0 Z-trim(124.8): 1  B-trim: 0 in 0/59
 Lambda= 0.074630
 statistics sampled from 47156 (47157) to 47156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.553), width:  16
 Scan time: 10.400

The best scores are:                                      opt bits E(85289)
NP_036283 (OMIM: 305423) factor VIII intron 22 pro ( 371) 2463 277.8 2.8e-74


>>NP_036283 (OMIM: 305423) factor VIII intron 22 protein  (371 aa)
 initn: 2463 init1: 2463 opt: 2463  Z-score: 1454.5  bits: 277.8 E(85289): 2.8e-74
Smith-Waterman score: 2463; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)

               10        20        30        40        50        60
pF1KB8 MAAAAAGLGGGGAGPGPEAGDFLARYRLVSNKLKKRFLRKPNVAEAGEQFGQLGRELRAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAAAAAGLGGGGAGPGPEAGDFLARYRLVSNKLKKRFLRKPNVAEAGEQFGQLGRELRAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ECLPYAAWCQLAVARCQQALFHGPGEALALTEAARLFLRQERDARQRLVCPAAYGEPLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ECLPYAAWCQLAVARCQQALFHGPGEALALTEAARLFLRQERDARQRLVCPAAYGEPLQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AASALGAAVRLHLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AASALGAAVRLHLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LQALGEAASCQLLARDYTGALAVFTRMQRLAREHGSHPVQSLPPPPPPAPQPGPGATPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LQALGEAASCQLLARDYTGALAVFTRMQRLAREHGSHPVQSLPPPPPPAPQPGPGATPAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PAALLPPNSGSAAPSPAALGAFSDVLVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PAALLPPNSGSAAPSPAALGAFSDVLVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 EAFDSHGQESSGQLPEELFLLLQSLVMATHEKDTEAIKSLQVEMWPLLTAEQNHLLHLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EAFDSHGQESSGQLPEELFLLLQSLVMATHEKDTEAIKSLQVEMWPLLTAEQNHLLHLVL
              310       320       330       340       350       360

              370 
pF1KB8 QETISPSGQGV
       :::::::::::
NP_036 QETISPSGQGV
              370 




371 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:44:23 2016 done: Fri Nov  4 14:44:24 2016
 Total Scan time: 10.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]