FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8681, 377 aa
  1>>>pF1KB8681 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6899+/-0.000848; mu= 15.9108+/- 0.051
 mean_var=82.6168+/-16.705, 0's: 0 Z-trim(108.8): 19  B-trim: 76 in 1/48
 Lambda= 0.141104
 statistics sampled from 10441 (10446) to 10441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.321), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS6891.1 PTGES2 gene_id:80142|Hs108|chr9         ( 377) 2522 522.9 1.8e-148


>>CCDS6891.1 PTGES2 gene_id:80142|Hs108|chr9              (377 aa)
 initn: 2522 init1: 2522 opt: 2522  Z-score: 2778.9  bits: 522.9 E(32554): 1.8e-148
Smith-Waterman score: 2522; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KB8 MDPAARVVRALWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MDPAARVVRALWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAALALGGALGLYHTARWHLRAQDLHAERSAAQLSLSSRLQLTLYQYKTCPFCSKVRAFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AAALALGGALGLYHTARWHLRAQDLHAERSAAQLSLSSRLQLTLYQYKTCPFCSKVRAFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 DFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PLEEIITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWRQWADD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PLEEIITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWRQWADD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 WLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 WLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 DNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 DNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQ
              310       320       330       340       350       360

              370       
pF1KB8 PWYLRVERAITEASPAH
       :::::::::::::::::
CCDS68 PWYLRVERAITEASPAH
              370       




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:31:53 2016 done: Fri Nov  4 14:31:53 2016
 Total Scan time:  2.780 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]