FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8674, 525 aa
  1>>>pF1KB8674 525 - 525 aa - 525 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8698+/-0.00116; mu= 1.6191+/- 0.069
 mean_var=216.6287+/-47.069, 0's: 0 Z-trim(109.2): 116  B-trim: 3 in 1/50
 Lambda= 0.087140
 statistics sampled from 10621 (10733) to 10621 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.33), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(32554)
CCDS2196.1 STAM2 gene_id:10254|Hs108|chr2          ( 525) 3430 444.5 1.4e-124
CCDS7122.1 STAM gene_id:8027|Hs108|chr10           ( 540) 1124 154.6 2.6e-37


>>CCDS2196.1 STAM2 gene_id:10254|Hs108|chr2               (525 aa)
 initn: 3430 init1: 3430 opt: 3430  Z-score: 2350.2  bits: 444.5 E(32554): 1.4e-124
Smith-Waterman score: 3430; 99.2% identity (99.8% similar) in 525 aa overlap (1-525:1-525)

               10        20        30        40        50        60
pF1KB8 MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VALQALTLLGACVANCGKIFRLGVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF
       ::::::::::::::::::::.: :::::::::::::::::::::::::::::::::::::
CCDS21 VALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QKDPQFSLISATIKSMKEEGITFPPAGSQTVSAAAKNGTSSNKNKEDEDIAKAIELSLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 QKDPQFSLISATIKSMKEEGITFPPAGSQTVSAAAKNGTSSNKNKEDEDIAKAIELSLQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QKQQHTETKSLYPSSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 QKQQHTETKSLYPSSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KGENHRGIGLFPSDFVTTNLNIETEVAAVDKLNVIDDDVEEIKKSEPEPVYIDEDKMDRA
       :::::::::::::.:::::::::::.::::::::::::::::::::::::::::::::::
CCDS21 KGENHRGIGLFPSNFVTTNLNIETEAAAVDKLNVIDDDVEEIKKSEPEPVYIDEDKMDRA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELSELNVKVLEALEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELSELNVKVLEALEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 YNKLVNEAPVYSVYSKLHPPAHYPPASSGVPMQTYPVQSHGGNYMGQSIHQVTVAQSYSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 YNKLVNEAPVYSVYSKLHPPAHYPPASSGVPMQTYPVQSHGGNYMGQSIHQVTVAQSYSL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 GPDQIGPLRSLPPNVNSSVTAQPAQTSYLSTGQDTVSNPTYMNQNSNLQSATGTTAYTQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 GPDQIGPLRSLPPNVNSSVTAQPAQTSYLSTGQDTVSNPTYMNQNSNLQSATGTTAYTQQ
              430       440       450       460       470       480

              490       500       510       520     
pF1KB8 MGMSVDMSSYQNTTSNLPQLAGFPVTVPAHPVAQQHTNYHQQPLL
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MGMSVDMSSYQNTTSNLPQLAGFPVTVPAHPVAQQHTNYHQQPLL
              490       500       510       520     

>>CCDS7122.1 STAM gene_id:8027|Hs108|chr10                (540 aa)
 initn: 1173 init1: 533 opt: 1124  Z-score: 783.3  bits: 154.6 E(32554): 2.6e-37
Smith-Waterman score: 1878; 56.2% identity (79.1% similar) in 541 aa overlap (1-523:1-533)

               10        20        30        40        50        60
pF1KB8 MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPH
       ::::..:::.:::::::.:.::.:::.::.:::::::.. .: ::::..::.::::: ::
CCDS71 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VALQALTLLGACVANCGKIFRLGVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF
       ::.::::::::::.::::::.: :::::::.::  :. ::.:::::::::.:::::..::
CCDS71 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEF
               70        80        90        100       110         

              130       140       150               160       170  
pF1KB8 QKDPQFSLISATIKSMKEEGITFPPAGSQTVSAA-------AKN-GTSSNKNKEDEDIAK
       ..:::.::::: ::..::.:.:::  :::..  :       ::. :: .:: ::.::.::
CCDS71 KNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANK-KEEEDLAK
     120       130       140       150       160       170         

            180       190       200         210       220       230
pF1KB8 AIELSLQEQKQQHTETKSLYPSSEIQLNNKV--ARKVRALYDFEAVEDNELTFKHGEIII
       ::::::.::.:: :  ..::::.   :.:.   .:::::.:::::.:::::::: :::: 
CCDS71 AIELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIIT
      180       190       200       210       220       230        

              240       250       260       270        280         
pF1KB8 VLDDSDANWWKGENHRGIGLFPSDFVTTNLNIETEVAAVDKLNV-IDDDVE-EIKKSEPE
       :::::: ::::::.:.:::::::.:::..:. : :.  ..: .: ..:::. :  . :::
CCDS71 VLDDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPE
      240       250       260       270       280       290        

      290       300       310       320       330       340        
pF1KB8 PVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELS
       :..:::::::. ::.::: ::.:..::  .:: :: .:.::::.::::::.:::::::::
CCDS71 PAFIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELS
      300       310       320       330       340       350        

      350       360       370       380       390        400       
pF1KB8 ELNVKVLEALELYNKLVNEAPVYSVYSKLHPPAHYPPASSGVP-MQTYPVQSHGGNYMGQ
       ::::::.::: ::.::.:: :.::.:.::.   .:   ::::   :.:     .: :.  
CCDS71 ELNVKVMEALSLYTKLMNEDPMYSMYAKLQNQPYYMQ-SSGVSGSQVYAGPPPSGAYLVA
      360       370       380       390        400       410       

       410       420       430         440       450       460     
pF1KB8 SIHQVTVAQSYSLGPDQIGPLRS--LPPNVNSSVTAQPAQTSYLSTGQDTVSNPTYMNQN
       .  :..  ::::: :.:.. : .  .::..: .. .: .:..: .:  ..:.. :: .: 
CCDS71 GNAQMSHLQSYSLPPEQLSSLSQAVVPPSANPALPSQQTQAAYPNTMVSSVQGNTYPSQA
       420       430       440       450       460       470       

         470       480       490       500          510       520  
pF1KB8 SNLQSATGTTAYTQQMGMSVDMSSYQNTTSNLPQLAGFPVT---VPAHPVAQQHTNYHQQ
          .   ..::     . ..:.. :::.  :.::. .. .:   .: .: ..:.    ::
CCDS71 PVYSPPPAATA----AAATADVTLYQNAGPNMPQVPNYNLTSSTLP-QPGGSQQPPQPQQ
       480           490       500       510        520       530  

               
pF1KB8 PLL     
       :       
CCDS71 PYSQKALL
            540




525 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:27:58 2016 done: Fri Nov  4 14:27:59 2016
 Total Scan time:  3.340 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]