FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8659, 658 aa
  1>>>pF1KB8659 658 - 658 aa - 658 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4501+/-0.000886; mu= 9.7680+/- 0.053
 mean_var=129.1204+/-26.014, 0's: 0 Z-trim(110.2): 16  B-trim: 187 in 1/51
 Lambda= 0.112870
 statistics sampled from 11453 (11462) to 11453 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.352), width:  16
 Scan time:  4.040

The best scores are:                                      opt bits E(32554)
CCDS33922.1 LSG1 gene_id:55341|Hs108|chr3          ( 658) 4464 738.5 6.9e-213
CCDS4680.1 GNL1 gene_id:2794|Hs108|chr6            ( 607)  426 80.9 5.6e-15


>>CCDS33922.1 LSG1 gene_id:55341|Hs108|chr3               (658 aa)
 initn: 4464 init1: 4464 opt: 4464  Z-score: 3935.5  bits: 738.5 E(32554): 6.9e-213
Smith-Waterman score: 4464; 99.8% identity (100.0% similar) in 658 aa overlap (1-658:1-658)

               10        20        30        40        50        60
pF1KB8 MGRRRAPAGGSLGRALMRHQTQRSRSHRHTDSWLHTSELNDGYDWGRLNLQSVTEQSSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGRRRAPAGGSLGRALMRHQTQRSRSHRHTDSWLHTSELNDGYDWGRLNLQSVTEQSSLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DFLATAELAGTEFVAEKLNIKFVPAEARTGLLSFEESQRIKKLHEENKQFLCIPRRPNWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DFLATAELAGTEFVAEKLNIKFVPAEARTGLLSFEESQRIKKLHEENKQFLCIPRRPNWN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QNTTPEELKQAEKDNFLEWRRQLVRLEEEQKLILTPFERNLDFWRQLWRVIERSDIVVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QNTTPEELKQAEKDNFLEWRRQLVRLEEEQKLILTPFERNLDFWRQLWRVIERSDIVVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VDARNPLLFRCEDLECYVKEMDANKENVILINKADLLTAEQRSAWAMYFEKEDVKVIFWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VDARNPLLFRCEDLECYVKEMDANKENVILINKADLLTAEQRSAWAMYFEKEDVKVIFWS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ALAGAIPLNGDSEEEANRDDRQSNTTEFGHSSFDQAEISHSESEHLPARDSPSLSENPTT
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS33 ALAGAIPLNGDSEEEANRDDRQSNTTKFGHSSFDQAEISHSESEHLPARDSPSLSENPTT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 DEDDSEYEDCPEEEEDDWQTCSEEDGPKEEDCSQDWKESSTADSEARSRKTPQKRQIHNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DEDDSEYEDCPEEEEDDWQTCSEEDGPKEEDCSQDWKESSTADSEARSRKTPQKRQIHNF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 SHLVSKQELLELFKELHTGRKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SHLVSKQELLELFKELHTGRKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 TKHFQTLYVEPGLCLCDCPGLVMPSFVSTKAEMTCSGILPIDQMRDHVPPVSLVCQNIPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TKHFQTLYVEPGLCLCDCPGLVMPSFVSTKAEMTCSGILPIDQMRDHVPPVSLVCQNIPR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 HVLEATYGINIITPREDEDPHRPPTSEELLTAYGYMRGFMTAHGQPDQPRSARYILKDYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HVLEATYGINIITPREDEDPHRPPTSEELLTAYGYMRGFMTAHGQPDQPRSARYILKDYV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 SGKLLYCHPPPGRDPVTFQHQHQRLLENKMNSDEIKMQLGRNKKAKQIENIVDKTFFHQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SGKLLYCHPPPGRDPVTFQHQHQRLLENKMNSDEIKMQLGRNKKAKQIENIVDKTFFHQE
              550       560       570       580       590       600

              610       620       630       640       650        
pF1KB8 NVRALTKGVQAVMGYKPGSGVVTASTASSENGAGKPWKKHGNRNKKEKSRRLYKHLDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NVRALTKGVQAVMGYKPGSGVVTASTASSENGAGKPWKKHGNRNKKEKSRRLYKHLDM
              610       620       630       640       650        

>>CCDS4680.1 GNL1 gene_id:2794|Hs108|chr6                 (607 aa)
 initn: 560 init1: 302 opt: 426  Z-score: 382.4  bits: 80.9 E(32554): 5.6e-15
Smith-Waterman score: 602; 31.0% identity (55.2% similar) in 449 aa overlap (111-552:127-522)

               90       100       110       120       130       140
pF1KB8 KFVPAEARTGLLSFEESQRIKKLHEENKQFLCIPRRPNWNQNTTPEELKQAEKDNFLEWR
                                     : .:::: :. . . :.: . :. .: .. 
CCDS46 KRAAREQVLQPVSAELLELDIREVYQPGSVLDFPRRPPWSYEMSKEQLMSQEERSFQDYL
        100       110       120       130       140       150      

              150       160       170       180       190       200
pF1KB8 RQLVRLEEEQKLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKE
        ..      .::  . ::.::. :::::::.: ::::. :.: :.:..     :  ::  
CCDS46 GKIHGAYSSEKL--SYFEHNLETWRQLWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTG
        160         170       180       190       200       210    

              210       220       230         240         250      
pF1KB8 MDANKENVILINKADLLTAEQRSAWAMYFEKE--DVKVIFWSALA--GAIPLNGDSEEEA
        . .   :...::.::       ::  ::...  ...:......      : . .:  . 
CCDS46 -ELGLALVLVLNKVDLAPPALVVAWKHYFHQHYPQLHVVLFTSFPRDPRTPQDPSSVLKK
           220       230       240       250       260       270   

        260       270       280       290       300       310      
pF1KB8 NRDDRQSNTTEFGHSSFDQAEISHSESEHLPARDSPSLSENPTTDEDDSEYEDCPEEEED
       .:   .. :  .:  .. .:     :.  .   :  :  :. . :   . . .   :::.
CCDS46 SRRRGRGWTRALGPEQLLRA----CEAITVGKVDLSSWREKIARDVAGATWGNGSGEEEE
           280       290           300       310       320         

        320       330       340       350       360       370      
pF1KB8 DWQTCSEEDGPKEEDCSQDWKESSTADSEARSRKTPQKRQIHNFSHLVSKQELLELFKEL
             :::::                                 . :: .:    .    
CCDS46 ------EEDGP---------------------------------AVLVEQQTDSAMEPTG
           330                                        340       350

        380       390       400       410       420       430      
pF1KB8 HTGRKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHFQTLYVEPGLCLC
        : .. ::: .:.: ::.::::::: :: ..: : :::: :::::..::: .. :.. ::
CCDS46 PTQERYKDGVVTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLC
              360       370       380       390       400       410

        440       450       460       470       480       490      
pF1KB8 DCPGLVMPSFVSTKAEMTCSGILPIDQMRDHVPPVSLVCQNIPRHVLEATYGINIITPRE
       :::::..::..  . ..  .:: :: :...    :. . . :: ..:     ...  : :
CCDS46 DCPGLIFPSLLPRQLQVL-AGIYPIAQIQEPYTAVGYLASRIPVQAL-----LHLRHP-E
              420        430       440       450            460    

        500         510       520        530       540       550   
pF1KB8 DEDP--HRPPTSEELLTAYGYMRGFMTAHG-QPDQPRSARYILKDYVSGKLLYCHPPPGR
        :::  ..:  . ..  :..  ::. ::.. . :  :.:  .:.  :.:.:  :  ::: 
CCDS46 AEDPSAEHPWCAWDICEAWAEKRGYKTAKAARNDVYRAANSLLRLAVDGRLSLCFHPPGY
           470       480       490       500       510       520   

           560       570       580       590       600       610   
pF1KB8 DPVTFQHQHQRLLENKMNSDEIKMQLGRNKKAKQIENIVDKTFFHQENVRALTKGVQAVM
                                                                   
CCDS46 SEQKGTWESHPETTELVVLQGRVGPAGDEEEEEEEELSSSCEEEGEEDRDADEEGEGDEE
           530       540       550       560       570       580   




658 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 09:14:31 2016 done: Sat Nov  5 09:14:32 2016
 Total Scan time:  4.040 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]