Result of FASTA (ccds) for
pF1KB8655
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8655, 566 aa
1>>>pF1KB8655 566 - 566 aa - 566 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1394+/-0.00102; mu= 15.3640+/- 0.062
mean_var=89.2117+/-17.522, 0's: 0 Z-trim(105.7): 7 B-trim: 0 in 0/51
Lambda= 0.135789
statistics sampled from 8549 (8552) to 8549 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.263), width: 16
Scan time: 3.380
The best scores are: opt bits E(32554)
CCDS13762.1 CDC45 gene_id:8318|Hs108|chr22 ( 566) 3771 749.2 3.1e-216
CCDS54500.1 CDC45 gene_id:8318|Hs108|chr22 ( 520) 2999 597.9 9.9e-171
CCDS54499.1 CDC45 gene_id:8318|Hs108|chr22 ( 598) 2571 514.1 1.9e-145
>>CCDS13762.1 CDC45 gene_id:8318|Hs108|chr22 (566 aa)
initn: 3771 init1: 3771 opt: 3771 Z-score: 3995.5 bits: 749.2 E(32554): 3.1e-216
Smith-Waterman score: 3771; 100.0% identity (100.0% similar) in 566 aa overlap (1-566:1-566)
10 20 30 40 50 60
pF1KB8 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RRDILFDYEQYEYHGTSSAMVMFELAWMLSKDLNDMLWWAIVGLTDQWVQDKITQMKYVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RRDILFDYEQYEYHGTSSAMVMFELAWMLSKDLNDMLWWAIVGLTDQWVQDKITQMKYVT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DVGVLQRHVSRHNHRNEDEENTLSVDCTRISFEYDLRLVLYQHWSLHDSLCNTSYTAARF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVGVLQRHVSRHNHRNEDEENTLSVDCTRISFEYDLRLVLYQHWSLHDSLCNTSYTAARF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KLWSVHGQKRLQEFLADMGLPLKQVKQKFQAMDISLKENLREMIEESANKFGMKDMRVQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLWSVHGQKRLQEFLADMGLPLKQVKQKFQAMDISLKENLREMIEESANKFGMKDMRVQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 FSIHFGFKHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYHGLELAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FSIHFGFKHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYHGLELAK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 KQLRATQQTIASCLCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLSLLSKHLLKSFVCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KQLRATQQTIASCLCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLSLLSKHLLKSFVCS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 TKNRRCKLLPLVMAAPLSMEHGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TKNRRCKLLPLVMAAPLSMEHGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHN
490 500 510 520 530 540
550 560
pF1KB8 HFDLSVIELKAEDRSKFLDALISLLS
::::::::::::::::::::::::::
CCDS13 HFDLSVIELKAEDRSKFLDALISLLS
550 560
>>CCDS54500.1 CDC45 gene_id:8318|Hs108|chr22 (520 aa)
initn: 2999 init1: 2999 opt: 2999 Z-score: 3178.7 bits: 597.9 E(32554): 9.9e-171
Smith-Waterman score: 3347; 91.9% identity (91.9% similar) in 566 aa overlap (1-566:1-520)
10 20 30 40 50 60
pF1KB8 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
:::::::: ::::::
CCDS54 AFLEHKEQ----------------------------------------------IKLLIK
70
130 140 150 160 170 180
pF1KB8 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
80 90 100 110 120 130
190 200 210 220 230 240
pF1KB8 RRDILFDYEQYEYHGTSSAMVMFELAWMLSKDLNDMLWWAIVGLTDQWVQDKITQMKYVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RRDILFDYEQYEYHGTSSAMVMFELAWMLSKDLNDMLWWAIVGLTDQWVQDKITQMKYVT
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB8 DVGVLQRHVSRHNHRNEDEENTLSVDCTRISFEYDLRLVLYQHWSLHDSLCNTSYTAARF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DVGVLQRHVSRHNHRNEDEENTLSVDCTRISFEYDLRLVLYQHWSLHDSLCNTSYTAARF
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB8 KLWSVHGQKRLQEFLADMGLPLKQVKQKFQAMDISLKENLREMIEESANKFGMKDMRVQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KLWSVHGQKRLQEFLADMGLPLKQVKQKFQAMDISLKENLREMIEESANKFGMKDMRVQT
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB8 FSIHFGFKHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYHGLELAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FSIHFGFKHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYHGLELAK
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB8 KQLRATQQTIASCLCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLSLLSKHLLKSFVCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KQLRATQQTIASCLCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLSLLSKHLLKSFVCS
380 390 400 410 420 430
490 500 510 520 530 540
pF1KB8 TKNRRCKLLPLVMAAPLSMEHGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TKNRRCKLLPLVMAAPLSMEHGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHN
440 450 460 470 480 490
550 560
pF1KB8 HFDLSVIELKAEDRSKFLDALISLLS
::::::::::::::::::::::::::
CCDS54 HFDLSVIELKAEDRSKFLDALISLLS
500 510 520
>>CCDS54499.1 CDC45 gene_id:8318|Hs108|chr22 (598 aa)
initn: 3757 init1: 2555 opt: 2571 Z-score: 2724.6 bits: 514.1 E(32554): 1.9e-145
Smith-Waterman score: 3697; 94.6% identity (94.6% similar) in 598 aa overlap (1-566:1-598)
10 20 30 40 50 60
pF1KB8 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AFLEHKEQFHYFILINCGANVDLLDILQPDEDTIFFVCDTHRPVNVVNVYNDTQIKLLIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QDDDLEVPAYEDIFRDEEEDEEHSGNDSDGSEPSEKRTRLEEEIVEQTMRRRQRREWEAR
130 140 150 160 170 180
190 200
pF1KB8 --------------------------------RRDILFDYEQYEYHGTSSAMVMFELAWM
::::::::::::::::::::::::::::
CCDS54 SGSGSEPVAAALEKSSRLFAGPMSDRTAPRSPRRDILFDYEQYEYHGTSSAMVMFELAWM
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB8 LSKDLNDMLWWAIVGLTDQWVQDKITQMKYVTDVGVLQRHVSRHNHRNEDEENTLSVDCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LSKDLNDMLWWAIVGLTDQWVQDKITQMKYVTDVGVLQRHVSRHNHRNEDEENTLSVDCT
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB8 RISFEYDLRLVLYQHWSLHDSLCNTSYTAARFKLWSVHGQKRLQEFLADMGLPLKQVKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RISFEYDLRLVLYQHWSLHDSLCNTSYTAARFKLWSVHGQKRLQEFLADMGLPLKQVKQK
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB8 FQAMDISLKENLREMIEESANKFGMKDMRVQTFSIHFGFKHKFLASDVVFATMSLMESPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FQAMDISLKENLREMIEESANKFGMKDMRVQTFSIHFGFKHKFLASDVVFATMSLMESPE
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB8 KDGSGTDHFIQALDSLSRSNLDKLYHGLELAKKQLRATQQTIASCLCTNLVISQGPFLYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KDGSGTDHFIQALDSLSRSNLDKLYHGLELAKKQLRATQQTIASCLCTNLVISQGPFLYC
430 440 450 460 470 480
450 460 470 480 490 500
pF1KB8 SLMEGTPDVMLFSRPASLSLLSKHLLKSFVCSTKNRRCKLLPLVMAAPLSMEHGTVTVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SLMEGTPDVMLFSRPASLSLLSKHLLKSFVCSTKNRRCKLLPLVMAAPLSMEHGTVTVVG
490 500 510 520 530 540
510 520 530 540 550 560
pF1KB8 IPPETDSSDRKNFFGRAFEKAAESTSSRMLHNHFDLSVIELKAEDRSKFLDALISLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IPPETDSSDRKNFFGRAFEKAAESTSSRMLHNHFDLSVIELKAEDRSKFLDALISLLS
550 560 570 580 590
566 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:56:19 2016 done: Sat Nov 5 21:56:20 2016
Total Scan time: 3.380 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]