Result of FASTA (omim) for
pF1KB8648
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8648, 340 aa
1>>>pF1KB8648 340 - 340 aa - 340 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8490+/-0.000363; mu= 18.4766+/- 0.023
mean_var=60.2674+/-11.848, 0's: 0 Z-trim(111.6): 70 B-trim: 447 in 2/54
Lambda= 0.165209
statistics sampled from 20235 (20306) to 20235 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.238), width: 16
Scan time: 7.830
The best scores are: opt bits E(85289)
NP_008999 (OMIM: 602721) meiotic recombination pro ( 340) 2192 531.0 1.4e-150
XP_011528137 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 2046 496.3 4.3e-140
XP_011528136 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 2046 496.3 4.3e-140
XP_011520160 (OMIM: 114480,179617,614508) PREDICTE ( 339) 1108 272.7 8.2e-73
NP_002866 (OMIM: 114480,179617,614508) DNA repair ( 339) 1108 272.7 8.2e-73
XP_006720689 (OMIM: 114480,179617,614508) PREDICTE ( 339) 1108 272.7 8.2e-73
XP_011520161 (OMIM: 114480,179617,614508) PREDICTE ( 339) 1108 272.7 8.2e-73
XP_011520159 (OMIM: 114480,179617,614508) PREDICTE ( 339) 1108 272.7 8.2e-73
XP_011520162 (OMIM: 114480,179617,614508) PREDICTE ( 339) 1108 272.7 8.2e-73
NP_597994 (OMIM: 114480,179617,614508) DNA repair ( 340) 948 234.5 2.5e-61
NP_001157741 (OMIM: 114480,179617,614508) DNA repa ( 340) 948 234.5 2.5e-61
XP_016884031 (OMIM: 602721) PREDICTED: meiotic rec ( 271) 929 229.9 4.7e-60
XP_006724175 (OMIM: 602721) PREDICTED: meiotic rec ( 285) 919 227.6 2.6e-59
NP_001265137 (OMIM: 602721) meiotic recombination ( 285) 919 227.6 2.6e-59
XP_011528139 (OMIM: 602721) PREDICTED: meiotic rec ( 307) 902 223.5 4.5e-58
XP_011528140 (OMIM: 602721) PREDICTED: meiotic rec ( 293) 816 203.0 6.5e-52
XP_011520164 (OMIM: 114480,179617,614508) PREDICTE ( 215) 787 196.0 6.1e-50
NP_001157742 (OMIM: 114480,179617,614508) DNA repa ( 280) 756 188.7 1.3e-47
XP_011520163 (OMIM: 114480,179617,614508) PREDICTE ( 280) 756 188.7 1.3e-47
NP_001308738 (OMIM: 602948) DNA repair protein RAD ( 347) 314 83.4 7.7e-16
NP_001308747 (OMIM: 602948) DNA repair protein RAD ( 347) 314 83.4 7.7e-16
NP_001308739 (OMIM: 602948) DNA repair protein RAD ( 347) 314 83.4 7.7e-16
NP_001308748 (OMIM: 602948) DNA repair protein RAD ( 348) 314 83.4 7.8e-16
NP_002868 (OMIM: 602948) DNA repair protein RAD51 ( 350) 314 83.4 7.8e-16
NP_598194 (OMIM: 602948) DNA repair protein RAD51 ( 350) 314 83.4 7.8e-16
NP_001308743 (OMIM: 602948) DNA repair protein RAD ( 351) 314 83.4 7.8e-16
NP_001308741 (OMIM: 602948) DNA repair protein RAD ( 351) 314 83.4 7.8e-16
NP_598193 (OMIM: 602948) DNA repair protein RAD51 ( 384) 314 83.5 8.4e-16
NP_001308750 (OMIM: 602948) DNA repair protein RAD ( 425) 314 83.5 9.1e-16
NP_001308744 (OMIM: 602948) DNA repair protein RAD ( 332) 307 81.7 2.4e-15
XP_011535352 (OMIM: 602948) PREDICTED: DNA repair ( 274) 266 71.9 1.8e-12
XP_011535353 (OMIM: 602948) PREDICTED: DNA repair ( 258) 264 71.4 2.4e-12
XP_016877034 (OMIM: 602948) PREDICTED: DNA repair ( 500) 264 71.6 4e-12
NP_001308746 (OMIM: 602948) DNA repair protein RAD ( 231) 222 61.4 2.2e-09
XP_016877036 (OMIM: 602948) PREDICTED: DNA repair ( 306) 222 61.5 2.8e-09
XP_006722065 (OMIM: 189960,602774,613390,613399) P ( 342) 193 54.6 3.7e-07
NP_005423 (OMIM: 114480,600675,613972) DNA repair ( 346) 193 54.6 3.7e-07
NP_001093589 (OMIM: 114480,600675,613972) DNA repa ( 346) 193 54.6 3.7e-07
XP_011535440 (OMIM: 114480,600675,613972) PREDICTE ( 346) 193 54.6 3.7e-07
XP_005268103 (OMIM: 114480,600675,613972) PREDICTE ( 346) 193 54.6 3.7e-07
NP_001093588 (OMIM: 114480,600675,613972) DNA repa ( 346) 193 54.6 3.7e-07
NP_478123 (OMIM: 189960,602774,613390,613399) DNA ( 376) 193 54.6 4e-07
XP_006722064 (OMIM: 189960,602774,613390,613399) P ( 377) 193 54.6 4e-07
NP_002869 (OMIM: 602954,614291) DNA repair protein ( 328) 184 52.4 1.6e-06
NP_001136043 (OMIM: 602954,614291) DNA repair prot ( 348) 177 50.8 5.2e-06
XP_016877035 (OMIM: 602948) PREDICTED: DNA repair ( 324) 160 46.7 8.2e-05
NP_005422 (OMIM: 600375) DNA repair protein XRCC2 ( 280) 152 44.8 0.00027
XP_016880408 (OMIM: 189960,602774,613390,613399) P ( 225) 139 41.6 0.002
XP_016880403 (OMIM: 189960,602774,613390,613399) P ( 259) 139 41.6 0.0022
XP_016880404 (OMIM: 189960,602774,613390,613399) P ( 259) 139 41.6 0.0022
>>NP_008999 (OMIM: 602721) meiotic recombination protein (340 aa)
initn: 2192 init1: 2192 opt: 2192 Z-score: 2824.6 bits: 531.0 E(85289): 1.4e-150
Smith-Waterman score: 2192; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KB8 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 ERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTR
250 260 270 280 290 300
310 320 330 340
pF1KB8 ISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
::::::::::::::::::::::::::::::::::::::::
NP_008 ISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
310 320 330 340
>>XP_011528137 (OMIM: 602721) PREDICTED: meiotic recombi (362 aa)
initn: 2043 init1: 2043 opt: 2046 Z-score: 2636.1 bits: 496.3 E(85289): 4.3e-140
Smith-Waterman score: 2046; 97.6% identity (98.5% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB8 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTR
250 260 270 280 290 300
310 320 330 340
pF1KB8 ISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
::::::::::::::::: :..:.
XP_011 ISLRKGRGELRIAKIYDRLSEREQKASVKTIKDPEEDTDTWSGGTTHTGACWGSAEGEHR
310 320 330 340 350 360
>>XP_011528136 (OMIM: 602721) PREDICTED: meiotic recombi (362 aa)
initn: 2043 init1: 2043 opt: 2046 Z-score: 2636.1 bits: 496.3 E(85289): 4.3e-140
Smith-Waterman score: 2046; 97.6% identity (98.5% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB8 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTR
250 260 270 280 290 300
310 320 330 340
pF1KB8 ISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
::::::::::::::::: :..:.
XP_011 ISLRKGRGELRIAKIYDRLSEREQKASVKTIKDPEEDTDTWSGGTTHTGACWGSAEGEHR
310 320 330 340 350 360
>>XP_011520160 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 1161 init1: 615 opt: 1108 Z-score: 1428.2 bits: 272.7 E(85289): 8.2e-73
Smith-Waterman score: 1108; 55.0% identity (79.5% similar) in 327 aa overlap (16-340:16-339)
10 20 30 40 50
pF1KB8 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
::::. : :. :.. :::. :.:::. .:. :.... .. .. :
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
:.::.::::.::: : ::. :: :: :. ..:. ...:::::.:.:::: ::::.
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV
.::: ::::::::::. ::: :: ::: : :: ..::::.::::.:: .:.:...
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL
. . ::::: ::::....:: .:: : :. . :. . :::.:: ::.:.:.::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLL-YQASAMMVESR-YALLIVDSATALYRTDYSGRGEL
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHAST
. ::..::..: : ....:..::: .:::..:. ::.: : :::::::::.:.:::::
XP_011 SARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHAST
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 TRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
::. ::::::: :: :::::: .:: :: :::.: :.::::.
XP_011 TRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
300 310 320 330
>>NP_002866 (OMIM: 114480,179617,614508) DNA repair prot (339 aa)
initn: 1161 init1: 615 opt: 1108 Z-score: 1428.2 bits: 272.7 E(85289): 8.2e-73
Smith-Waterman score: 1108; 55.0% identity (79.5% similar) in 327 aa overlap (16-340:16-339)
10 20 30 40 50
pF1KB8 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
::::. : :. :.. :::. :.:::. .:. :.... .. .. :
NP_002 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
:.::.::::.::: : ::. :: :: :. ..:. ...:::::.:.:::: ::::.
NP_002 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV
.::: ::::::::::. ::: :: ::: : :: ..::::.::::.:: .:.:...
NP_002 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL
. . ::::: ::::....:: .:: : :. . :. . :::.:: ::.:.:.::::::
NP_002 SGSDVLDNVAYARAFNTDHQTQLL-YQASAMMVESR-YALLIVDSATALYRTDYSGRGEL
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHAST
. ::..::..: : ....:..::: .:::..:. ::.: : :::::::::.:.:::::
NP_002 SARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHAST
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 TRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
::. ::::::: :: :::::: .:: :: :::.: :.::::.
NP_002 TRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
300 310 320 330
>>XP_006720689 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 1161 init1: 615 opt: 1108 Z-score: 1428.2 bits: 272.7 E(85289): 8.2e-73
Smith-Waterman score: 1108; 55.0% identity (79.5% similar) in 327 aa overlap (16-340:16-339)
10 20 30 40 50
pF1KB8 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
::::. : :. :.. :::. :.:::. .:. :.... .. .. :
XP_006 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
:.::.::::.::: : ::. :: :: :. ..:. ...:::::.:.:::: ::::.
XP_006 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV
.::: ::::::::::. ::: :: ::: : :: ..::::.::::.:: .:.:...
XP_006 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL
. . ::::: ::::....:: .:: : :. . :. . :::.:: ::.:.:.::::::
XP_006 SGSDVLDNVAYARAFNTDHQTQLL-YQASAMMVESR-YALLIVDSATALYRTDYSGRGEL
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHAST
. ::..::..: : ....:..::: .:::..:. ::.: : :::::::::.:.:::::
XP_006 SARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHAST
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 TRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
::. ::::::: :: :::::: .:: :: :::.: :.::::.
XP_006 TRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
300 310 320 330
>>XP_011520161 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 1161 init1: 615 opt: 1108 Z-score: 1428.2 bits: 272.7 E(85289): 8.2e-73
Smith-Waterman score: 1108; 55.0% identity (79.5% similar) in 327 aa overlap (16-340:16-339)
10 20 30 40 50
pF1KB8 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
::::. : :. :.. :::. :.:::. .:. :.... .. .. :
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
:.::.::::.::: : ::. :: :: :. ..:. ...:::::.:.:::: ::::.
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV
.::: ::::::::::. ::: :: ::: : :: ..::::.::::.:: .:.:...
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL
. . ::::: ::::....:: .:: : :. . :. . :::.:: ::.:.:.::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLL-YQASAMMVESR-YALLIVDSATALYRTDYSGRGEL
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHAST
. ::..::..: : ....:..::: .:::..:. ::.: : :::::::::.:.:::::
XP_011 SARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHAST
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 TRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
::. ::::::: :: :::::: .:: :: :::.: :.::::.
XP_011 TRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
300 310 320 330
>>XP_011520159 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 1161 init1: 615 opt: 1108 Z-score: 1428.2 bits: 272.7 E(85289): 8.2e-73
Smith-Waterman score: 1108; 55.0% identity (79.5% similar) in 327 aa overlap (16-340:16-339)
10 20 30 40 50
pF1KB8 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
::::. : :. :.. :::. :.:::. .:. :.... .. .. :
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
:.::.::::.::: : ::. :: :: :. ..:. ...:::::.:.:::: ::::.
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV
.::: ::::::::::. ::: :: ::: : :: ..::::.::::.:: .:.:...
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL
. . ::::: ::::....:: .:: : :. . :. . :::.:: ::.:.:.::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLL-YQASAMMVESR-YALLIVDSATALYRTDYSGRGEL
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHAST
. ::..::..: : ....:..::: .:::..:. ::.: : :::::::::.:.:::::
XP_011 SARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHAST
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 TRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
::. ::::::: :: :::::: .:: :: :::.: :.::::.
XP_011 TRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
300 310 320 330
>>XP_011520162 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 1161 init1: 615 opt: 1108 Z-score: 1428.2 bits: 272.7 E(85289): 8.2e-73
Smith-Waterman score: 1108; 55.0% identity (79.5% similar) in 327 aa overlap (16-340:16-339)
10 20 30 40 50
pF1KB8 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
::::. : :. :.. :::. :.:::. .:. :.... .. .. :
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
:.::.::::.::: : ::. :: :: :. ..:. ...:::::.:.:::: ::::.
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV
.::: ::::::::::. ::: :: ::: : :: ..::::.::::.:: .:.:...
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL
. . ::::: ::::....:: .:: : :. . :. . :::.:: ::.:.:.::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLL-YQASAMMVESR-YALLIVDSATALYRTDYSGRGEL
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHAST
. ::..::..: : ....:..::: .:::..:. ::.: : :::::::::.:.:::::
XP_011 SARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHAST
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 TRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
::. ::::::: :: :::::: .:: :: :::.: :.::::.
XP_011 TRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
300 310 320 330
>>NP_597994 (OMIM: 114480,179617,614508) DNA repair prot (340 aa)
initn: 1033 init1: 497 opt: 948 Z-score: 1222.1 bits: 234.5 E(85289): 2.5e-61
Smith-Waterman score: 948; 50.1% identity (75.2% similar) in 335 aa overlap (16-340:16-340)
10 20 30 40 50
pF1KB8 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
::::. : :. :.. :::. :.:::. .:. :.... .. .. :
NP_597 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHIT--TGSQEF----DKLLG
:.::.::::.::: : : .. .: .. .:. .::.. ....:
NP_597 INIKGISEAKADKI------LTESRSVARLE-CNSVILVYCTLRLSGSSDSPASASRVVG
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 --GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR
::::. .::: ::::::::::. ::: :: ::: : :: ..::::.::::.::
NP_597 TTGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 DIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV
.:.:.... . ::::: ::::....:: .:: : :. . :. . :::.:: ::.:.
NP_597 AVAERYGLSGSDVLDNVAYARAFNTDHQTQLL-YQASAMMVESR-YALLIVDSATALYRT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 DFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGG
:.::::::. ::..::..: : ....:..::: .:::..:. ::.: : :::::::::
NP_597 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGG
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 HILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
.:.:::::::. ::::::: :: :::::: .:: :: :::.: :.::::.
NP_597 NIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
300 310 320 330 340
340 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:50:54 2016 done: Sat Nov 5 21:50:56 2016
Total Scan time: 7.830 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]