Result of FASTA (omim) for
pF1KB8645
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8645, 266 aa
1>>>pF1KB8645 266 - 266 aa - 266 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0093+/-0.00043; mu= 17.2227+/- 0.027
mean_var=87.2345+/-17.488, 0's: 0 Z-trim(112.0): 347 B-trim: 586 in 1/51
Lambda= 0.137319
statistics sampled from 20412 (20818) to 20412 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.244), width: 16
Scan time: 6.020
The best scores are: opt bits E(85289)
XP_005261499 (OMIM: 612842) PREDICTED: GTP-binding ( 266) 1769 360.5 1.8e-99
XP_011528342 (OMIM: 612842) PREDICTED: GTP-binding ( 266) 1769 360.5 1.8e-99
XP_016884191 (OMIM: 612842) PREDICTED: GTP-binding ( 266) 1769 360.5 1.8e-99
NP_055125 (OMIM: 612842) GTP-binding protein Rhes ( 266) 1769 360.5 1.8e-99
XP_016884190 (OMIM: 612842) PREDICTED: GTP-binding ( 278) 1769 360.5 1.9e-99
NP_057168 (OMIM: 605550) dexamethasone-induced Ras ( 281) 1015 211.1 1.8e-54
NP_001186918 (OMIM: 605550) dexamethasone-induced ( 122) 471 103.0 2.8e-22
NP_060064 (OMIM: 607863) GTP-binding protein Di-Ra ( 199) 380 85.2 1e-16
NP_660156 (OMIM: 607862) GTP-binding protein Di-Ra ( 198) 355 80.2 3.2e-15
XP_011526015 (OMIM: 607862) PREDICTED: GTP-binding ( 232) 355 80.3 3.6e-15
NP_002877 (OMIM: 179541) ras-related protein Rap-2 ( 183) 319 73.1 4.2e-13
NP_036382 (OMIM: 600098) ras-related protein R-Ras ( 204) 315 72.3 7.9e-13
NP_066361 (OMIM: 179540) ras-related protein Rap-2 ( 183) 313 71.9 9.7e-13
NP_006261 (OMIM: 165090) ras-related protein R-Ras ( 218) 309 71.2 1.9e-12
NP_789765 (OMIM: 109800,137550,162900,163200,18847 ( 170) 306 70.4 2.4e-12
XP_011518955 (OMIM: 109800,114480,137215,163200,19 ( 188) 306 70.5 2.6e-12
NP_004976 (OMIM: 109800,114480,137215,163200,19007 ( 188) 306 70.5 2.6e-12
NP_203524 (OMIM: 109800,114480,137215,163200,19007 ( 189) 306 70.5 2.6e-12
NP_005334 (OMIM: 109800,137550,162900,163200,18847 ( 189) 306 70.5 2.6e-12
NP_001123914 (OMIM: 109800,137550,162900,163200,18 ( 189) 306 70.5 2.6e-12
XP_006719132 (OMIM: 109800,114480,137215,163200,19 ( 189) 306 70.5 2.6e-12
XP_016874782 (OMIM: 109800,114480,137215,163200,19 ( 227) 306 70.6 2.9e-12
NP_056461 (OMIM: 179530) ras-related protein Rap-1 ( 184) 301 69.5 5e-12
NP_001010942 (OMIM: 179530) ras-related protein Ra ( 184) 301 69.5 5e-12
NP_001278825 (OMIM: 179520) ras-related protein Ra ( 184) 299 69.1 6.6e-12
XP_016857453 (OMIM: 179520) PREDICTED: ras-related ( 184) 299 69.1 6.6e-12
XP_016857451 (OMIM: 179520) PREDICTED: ras-related ( 184) 299 69.1 6.6e-12
XP_016857452 (OMIM: 179520) PREDICTED: ras-related ( 184) 299 69.1 6.6e-12
NP_002875 (OMIM: 179520) ras-related protein Rap-1 ( 184) 299 69.1 6.6e-12
NP_001010935 (OMIM: 179520) ras-related protein Ra ( 184) 299 69.1 6.6e-12
XP_016857450 (OMIM: 179520) PREDICTED: ras-related ( 195) 299 69.1 6.9e-12
XP_016857449 (OMIM: 179520) PREDICTED: ras-related ( 195) 299 69.1 6.9e-12
NP_002515 (OMIM: 114500,137550,162900,163200,16479 ( 189) 298 68.9 7.7e-12
XP_005263786 (OMIM: 179551) PREDICTED: ras-related ( 206) 296 68.6 1.1e-11
XP_016860111 (OMIM: 179551) PREDICTED: ras-related ( 206) 296 68.6 1.1e-11
NP_002872 (OMIM: 179551) ras-related protein Ral-B ( 206) 296 68.6 1.1e-11
XP_005263785 (OMIM: 179551) PREDICTED: ras-related ( 206) 296 68.6 1.1e-11
XP_005263784 (OMIM: 179551) PREDICTED: ras-related ( 206) 296 68.6 1.1e-11
XP_016860110 (OMIM: 179551) PREDICTED: ras-related ( 228) 296 68.6 1.2e-11
XP_005263781 (OMIM: 179551) PREDICTED: ras-related ( 228) 296 68.6 1.2e-11
XP_011509875 (OMIM: 179551) PREDICTED: ras-related ( 229) 296 68.6 1.2e-11
NP_008843 (OMIM: 609591,615355) GTP-binding protei ( 219) 289 67.2 2.9e-11
NP_001243750 (OMIM: 609591,615355) GTP-binding pro ( 236) 289 67.2 3.1e-11
NP_001259006 (OMIM: 609592) GTP-binding protein Ri ( 153) 282 65.6 6e-11
XP_005247286 (OMIM: 608435) PREDICTED: ras-related ( 170) 282 65.7 6.5e-11
XP_016861376 (OMIM: 608435) PREDICTED: ras-related ( 208) 282 65.8 7.4e-11
NP_001078518 (OMIM: 608435) ras-related protein M- ( 208) 282 65.8 7.4e-11
NP_001239019 (OMIM: 608435) ras-related protein M- ( 208) 282 65.8 7.4e-11
NP_036351 (OMIM: 608435) ras-related protein M-Ras ( 208) 282 65.8 7.4e-11
XP_005247285 (OMIM: 608435) PREDICTED: ras-related ( 208) 282 65.8 7.4e-11
>>XP_005261499 (OMIM: 612842) PREDICTED: GTP-binding pro (266 aa)
initn: 1769 init1: 1769 opt: 1769 Z-score: 1906.6 bits: 360.5 E(85289): 1.8e-99
Smith-Waterman score: 1769; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
190 200 210 220 230 240
250 260
pF1KB8 NSDLKYIKAKVLREGQARERDKCTIQ
::::::::::::::::::::::::::
XP_005 NSDLKYIKAKVLREGQARERDKCTIQ
250 260
>>XP_011528342 (OMIM: 612842) PREDICTED: GTP-binding pro (266 aa)
initn: 1769 init1: 1769 opt: 1769 Z-score: 1906.6 bits: 360.5 E(85289): 1.8e-99
Smith-Waterman score: 1769; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
190 200 210 220 230 240
250 260
pF1KB8 NSDLKYIKAKVLREGQARERDKCTIQ
::::::::::::::::::::::::::
XP_011 NSDLKYIKAKVLREGQARERDKCTIQ
250 260
>>XP_016884191 (OMIM: 612842) PREDICTED: GTP-binding pro (266 aa)
initn: 1769 init1: 1769 opt: 1769 Z-score: 1906.6 bits: 360.5 E(85289): 1.8e-99
Smith-Waterman score: 1769; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
190 200 210 220 230 240
250 260
pF1KB8 NSDLKYIKAKVLREGQARERDKCTIQ
::::::::::::::::::::::::::
XP_016 NSDLKYIKAKVLREGQARERDKCTIQ
250 260
>>NP_055125 (OMIM: 612842) GTP-binding protein Rhes [Hom (266 aa)
initn: 1769 init1: 1769 opt: 1769 Z-score: 1906.6 bits: 360.5 E(85289): 1.8e-99
Smith-Waterman score: 1769; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
190 200 210 220 230 240
250 260
pF1KB8 NSDLKYIKAKVLREGQARERDKCTIQ
::::::::::::::::::::::::::
NP_055 NSDLKYIKAKVLREGQARERDKCTIQ
250 260
>>XP_016884190 (OMIM: 612842) PREDICTED: GTP-binding pro (278 aa)
initn: 1769 init1: 1769 opt: 1769 Z-score: 1906.4 bits: 360.5 E(85289): 1.9e-99
Smith-Waterman score: 1769; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:13-278)
10 20 30 40
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQY
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPASLALLQPRAMMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQY
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 TPTIEDFHRKVYNIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPTIEDFHRKVYNIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 VKRLQKQILEVKSCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKRLQKQILEVKSCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAY
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 FEVSAKKNTNVDEMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FEVSAKKNTNVDEMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAY
190 200 210 220 230 240
230 240 250 260
pF1KB8 GMVSPFARRPSVNSDLKYIKAKVLREGQARERDKCTIQ
::::::::::::::::::::::::::::::::::::::
XP_016 GMVSPFARRPSVNSDLKYIKAKVLREGQARERDKCTIQ
250 260 270
>>NP_057168 (OMIM: 605550) dexamethasone-induced Ras-rel (281 aa)
initn: 1129 init1: 980 opt: 1015 Z-score: 1099.0 bits: 211.1 E(85289): 1.8e-54
Smith-Waterman score: 1143; 62.0% identity (84.1% similar) in 276 aa overlap (1-265:6-280)
10 20 30 40 50
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDF
:.: . .. ::.:::: ::::.::.:.:::..::::::.::::: ::::::::
NP_057 MKLAAMIKKMCPSDSELSIPAKNCYRMVILGSSKVGKTAIVSRFLTGRFEDAYTPTIEDF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 HRKVYNIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQ
::: :.:::..:::::::::::::::::::::::::::::::::::::.::.::.::..:
NP_057 HRKFYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRDSFEEVQRLRQQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 ILEVKSCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGD-ENCAYFEVSAK
::..:::::::::: ...:.::::::.:. .. :.: : : ::. : . :::::.:::
NP_057 ILDTKSCLKNKTKENVDVPLVICGNKGDR-DFYREVDQREIEQLVGDDPQRCAYFEISAK
130 140 150 160 170
180 190 200 210 220
pF1KB8 KNTNVDEMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEM---------
::...:.:: .::.::::: :::: ::::.:::: :..: . . ... .
NP_057 KNSSLDQMFRALFAMAKLPSEMSPDLHRKVSVQYCDVLHKKALRNKKLLRAGSGGGGGDP
180 190 200 210 220 230
230 240 250 260
pF1KB8 -DAYGMVSPFARRPSVNSDLKYIKAKVLREGQARERDKCTIQ
::.:.:.::::::::.::: ::. :. .::.....:.:
NP_057 GDAFGIVAPFARRPSVHSDLMYIREKASAGSQAKDKERCVIS
240 250 260 270 280
>>NP_001186918 (OMIM: 605550) dexamethasone-induced Ras- (122 aa)
initn: 471 init1: 471 opt: 471 Z-score: 521.1 bits: 103.0 E(85289): 2.8e-22
Smith-Waterman score: 471; 75.6% identity (91.1% similar) in 90 aa overlap (1-90:6-95)
10 20 30 40 50
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDF
:.: . .. ::.:::: ::::.::.:.:::..::::::.::::: ::::::::
NP_001 MKLAAMIKKMCPSDSELSIPAKNCYRMVILGSSKVGKTAIVSRFLTGRFEDAYTPTIEDF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 HRKVYNIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQ
::: :.:::..::::::::::::::::::::::::
NP_001 HRKFYSIRGEVYQLDILDTSGNHPFPAMRRLSILTDPRHQVLPQEQNQGERGRAPGHLRQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 ILEVKSCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKK
NP_001 QG
>>NP_060064 (OMIM: 607863) GTP-binding protein Di-Ras2 [ (199 aa)
initn: 402 init1: 331 opt: 380 Z-score: 421.0 bits: 85.2 E(85289): 1e-16
Smith-Waterman score: 448; 43.1% identity (73.6% similar) in 174 aa overlap (18-191:6-170)
10 20 30 40 50 60
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
:.::..:.::. :::::.: ::..: :...: ::.:: .:.:
NP_060 MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI
10 20 30 40
70 80 90 100 110 120
pF1KB8 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
. .. :.: ::.:.: ::::.:::: : .::::.:. .:.:..:.: . .:: :.:
NP_060 SCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
. .. .:... ::: :.. :.: ..::: :. .::..:.::: : ::
NP_060 G-------DVESIPIMLVGNKCDESP-SREVQSSEAEALAR-TWKCAFMETSAKLNHNVK
110 120 130 140 150
190 200 210 220 230 240
pF1KB8 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
:.: :... :
NP_060 ELFQELLNLEKRRTVSLQIDGKKSKQQKRKEKLKGKCVIM
160 170 180 190
>>NP_660156 (OMIM: 607862) GTP-binding protein Di-Ras1 [ (198 aa)
initn: 377 init1: 309 opt: 355 Z-score: 394.3 bits: 80.2 E(85289): 3.2e-15
Smith-Waterman score: 444; 44.2% identity (72.7% similar) in 172 aa overlap (18-189:6-167)
10 20 30 40 50 60
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFHRKVY
:.::.::.::. :::::.: ::..: :.: : ::::: .:.:
NP_660 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVI
10 20 30 40
70 80 90 100 110 120
pF1KB8 NIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVK
. .. :.: ::.:.: ::::.:::: : .::::::. ...:..:. . : :...:
NP_660 SCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 SCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCAYFEVSAKKNTNVD
. ... .:... ::: : : :.: : ::. :. . .::..:.::: : ::
NP_660 GSVED-------IPVMLVGNKCD--ETQREVDTREAQA-VAQEWKCAFMETSAKMNYNVK
110 120 130 140 150
190 200 210 220 230 240
pF1KB8 EMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDAYGMVSPFARRPSV
:.: :...
NP_660 ELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM
160 170 180 190
>>XP_011526015 (OMIM: 607862) PREDICTED: GTP-binding pro (232 aa)
initn: 377 init1: 309 opt: 355 Z-score: 393.4 bits: 80.3 E(85289): 3.6e-15
Smith-Waterman score: 444; 44.2% identity (72.7% similar) in 172 aa overlap (18-189:40-201)
10 20 30 40
pF1KB8 MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFLNGRFEDQ
:.::.::.::. :::::.: ::..: :.:
XP_011 RQARSGVLAAGTSPPGPGRPPAAGKMPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 YTPTIEDFHRKVYNIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFD
: ::::: .:.: . .. :.: ::.:.: ::::.:::: : .::::::. ...:..
XP_011 YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 EVKRLQKQILEVKSCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELLVSGDENCA
:. . : :...:. ... .:... ::: : : :.: : ::. :. . .::
XP_011 ELGPIYKLIVQIKGSVED-------IPVMLVGNKCD--ETQREVDTREAQA-VAQEWKCA
130 140 150 160 170
170 180 190 200 210 220
pF1KB8 YFEVSAKKNTNVDEMFYVLFSMAKLPHEMSPALHRKISVQYGDAFHPRPFCMRRVKEMDA
..:.::: : :: :.: :...
XP_011 FMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM
180 190 200 210 220 230
266 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:08:30 2016 done: Fri Nov 4 14:08:31 2016
Total Scan time: 6.020 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]