FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8642, 1091 aa
  1>>>pF1KB8642 1091 - 1091 aa - 1091 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.3705+/-0.0017; mu= -6.0399+/- 0.100
 mean_var=384.1362+/-81.039, 0's: 0 Z-trim(105.9): 72  B-trim: 395 in 2/50
 Lambda= 0.065438
 statistics sampled from 8652 (8684) to 8652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.267), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS1690.1 SMC6 gene_id:79677|Hs108|chr2           (1091) 7076 684.0 4.8e-196


>>CCDS1690.1 SMC6 gene_id:79677|Hs108|chr2                (1091 aa)
 initn: 7076 init1: 7076 opt: 7076  Z-score: 3633.1  bits: 684.0 E(32554): 4.8e-196
Smith-Waterman score: 7076; 100.0% identity (100.0% similar) in 1091 aa overlap (1-1091:1-1091)

               10        20        30        40        50        60
pF1KB8 MAKRKEENFSSPKNAKRPRQEELEDFDKDGDEDECKGTTLTAAEVGIIESIHLKNFMCHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MAKRKEENFSSPKNAKRPRQEELEDFDKDGDEDECKGTTLTAAEVGIIESIHLKNFMCHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 MLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLKGFVKDGQNSADIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLKGFVKDGQNSADIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ITLRNRGDDAFKASVYGNSILIQQHISIDGSRSYKLKSATGSVVSTRKEELIAILDHFNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ITLRNRGDDAFKASVYGNSILIQQHISIDGSRSYKLKSATGSVVSTRKEELIAILDHFNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQMKEDYSYIMETKERTKEQIHQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQMKEDYSYIMETKERTKEQIHQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EERLTELKRQCVEKEERFQSIAGLSTMKTNLESLKHEMAWAVVNEIEKQLNAIRDNIKIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EERLTELKRQCVEKEERFQSIAGLSTMKTNLESLKHEMAWAVVNEIEKQLNAIRDNIKIG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 EDRAARLDRKMEEQQVRLNEAEQKYKDIQDKLEKISEETNARAPECMALKADVVAKKRAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EDRAARLDRKMEEQQVRLNEAEQKYKDIQDKLEKISEETNARAPECMALKADVVAKKRAY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 NEAEVLYNRSLNEYKALKKDDEQLCKRIEELKKSTDQSLEPERLERQKKISWLKERVKAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NEAEVLYNRSLNEYKALKKDDEQLCKRIEELKKSTDQSLEPERLERQKKISWLKERVKAF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 QNQENSVNQEIEQFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QNQENSVNQEIEQFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 GPNVPALLEAIDDAYRQGHFTYKPVGPLGACIHLRDPELALAIESCLKGLLQAYCCHNHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GPNVPALLEAIDDAYRQGHFTYKPVGPLGACIHLRDPELALAIESCLKGLLQAYCCHNHA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 DERVLQALMKRFYLPGTSRPPIIVSEFRNEIYDVRHRAAYHPDFPTVLTALEIDNAVVAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 DERVLQALMKRFYLPGTSRPPIIVSEFRNEIYDVRHRAAYHPDFPTVLTALEIDNAVVAN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 SLIDMRGIETVLLIKNNSVARAVMQSQKPPKNCREAFTADGDQVFAGRYYSSENTRPKFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SLIDMRGIETVLLIKNNSVARAVMQSQKPPKNCREAFTADGDQVFAGRYYSSENTRPKFL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 SRDVDSEISDLENEVENKTAQILNLQQHLSALEKDIKHNEELLKRCQLHYKELKMKIRKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SRDVDSEISDLENEVENKTAQILNLQQHLSALEKDIKHNEELLKRCQLHYKELKMKIRKN
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 ISEIRELENIEEHQSVDIATLEDEAQENKSKMKMVEEHMEQQKENMEHLKSLKIEAENKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ISEIRELENIEEHQSVDIATLEDEAQENKSKMKMVEEHMEQQKENMEHLKSLKIEAENKY
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 DAIKFKINQLSELADPLKDELNLADSEVDNQKRGKRHYEEKQKEHLDTLNKKKRELDMKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 DAIKFKINQLSELADPLKDELNLADSEVDNQKRGKRHYEEKQKEHLDTLNKKKRELDMKE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB8 KELEEKMSQARQICPERIEVEKSASILDKEINRLRQKIQAEHASHGDREEIMRQYQEARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KELEEKMSQARQICPERIEVEKSASILDKEINRLRQKIQAEHASHGDREEIMRQYQEARE
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB8 TYLDLDSKVRTLKKFIKLLGEIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 TYLDLDSKVRTLKKFIKLLGEIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNF
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB8 DHKNETLSISVQPGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 DHKNETLSISVQPGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVY
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB8 MDMVNRRIAMDLILKMADSQRFRQFILLTPQSMSSLPSSKLIRILRMSDPERGQTTLPFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MDMVNRRIAMDLILKMADSQRFRQFILLTPQSMSSLPSSKLIRILRMSDPERGQTTLPFR
             1030      1040      1050      1060      1070      1080

             1090 
pF1KB8 PVTQEEDDDQR
       :::::::::::
CCDS16 PVTQEEDDDQR
             1090 




1091 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:07:28 2016 done: Fri Nov  4 14:07:28 2016
 Total Scan time:  3.290 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]