FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8619, 316 aa
  1>>>pF1KB8619 316 - 316 aa - 316 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9826+/-0.00063; mu= 13.3613+/- 0.039
 mean_var=80.5152+/-17.237, 0's: 0 Z-trim(112.7): 23  B-trim: 704 in 1/51
 Lambda= 0.142934
 statistics sampled from 13369 (13390) to 13369 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.411), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS12251.1 YIPF2 gene_id:78992|Hs108|chr19        ( 316) 2143 450.8 6.5e-127
CCDS82293.1 YIPF2 gene_id:78992|Hs108|chr19        ( 277) 1058 227.0 1.3e-59
CCDS584.1 YIPF1 gene_id:54432|Hs108|chr1           ( 306)  994 213.8 1.3e-55


>>CCDS12251.1 YIPF2 gene_id:78992|Hs108|chr19             (316 aa)
 initn: 2143 init1: 2143 opt: 2143  Z-score: 2391.9  bits: 450.8 E(32554): 6.5e-127
Smith-Waterman score: 2143; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KB8 MASADELTFHEFEEATNLLADTPDAATTSRSDQLTPQGHVAVAVGSGGSYGAEDEVEEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASADELTFHEFEEATNLLADTPDAATTSRSDQLTPQGHVAVAVGSGGSYGAEDEVEEES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LYGPFWICATLAFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTVAGISIYCYAWLVPLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LYGPFWICATLAFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTVAGISIYCYAWLVPLAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 WGFLRWRKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WGFLRWRKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 AGLVFTLWPVVREDTRLVATVLLSVVVLLHALLAMGCKLYFFQSLPPENVAPPPQITSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AGLVFTLWPVVREDTRLVATVLLSVVVLLHALLAMGCKLYFFQSLPPENVAPPPQITSLP
              250       260       270       280       290       300

              310      
pF1KB8 SNIALSPTLPQSLAPS
       ::::::::::::::::
CCDS12 SNIALSPTLPQSLAPS
              310      

>>CCDS82293.1 YIPF2 gene_id:78992|Hs108|chr19             (277 aa)
 initn: 1057 init1: 1057 opt: 1058  Z-score: 1183.6  bits: 227.0 E(32554): 1.3e-59
Smith-Waterman score: 1785; 87.7% identity (87.7% similar) in 316 aa overlap (1-316:1-277)

               10        20        30        40        50        60
pF1KB8 MASADELTFHEFEEATNLLADTPDAATTSRSDQLTPQGHVAVAVGSGGSYGAEDEVEEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MASADELTFHEFEEATNLLADTPDAATTSRSDQLTPQGHVAVAVGSGGSYGAEDEVEEES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LYGPFWICATLAFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTVAGISIYCYAWLVPLAL
       ::                                       :::::::::::::::::::
CCDS82 LY---------------------------------------VTVAGISIYCYAWLVPLAL
                                                     130       140 

              190       200       210       220       230       240
pF1KB8 WGFLRWRKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WGFLRWRKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSA
             150       160       170       180       190       200 

              250       260       270       280       290       300
pF1KB8 AGLVFTLWPVVREDTRLVATVLLSVVVLLHALLAMGCKLYFFQSLPPENVAPPPQITSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AGLVFTLWPVVREDTRLVATVLLSVVVLLHALLAMGCKLYFFQSLPPENVAPPPQITSLP
             210       220       230       240       250       260 

              310      
pF1KB8 SNIALSPTLPQSLAPS
       ::::::::::::::::
CCDS82 SNIALSPTLPQSLAPS
             270       

>>CCDS584.1 YIPF1 gene_id:54432|Hs108|chr1                (306 aa)
 initn: 1028 init1: 895 opt: 994  Z-score: 1111.6  bits: 213.8 E(32554): 1.3e-55
Smith-Waterman score: 994; 50.0% identity (75.5% similar) in 302 aa overlap (1-301:1-297)

               10        20        30         40        50         
pF1KB8 MASADELTFHEFEEATNLLADTPDAATTSRSDQ-LTPQGHVAVAVGSGGSYGAEDEVEEE
       ::..:.: :.:: .:.. :. .:::.:..  :   ::. . .   :::     :   ...
CCDS58 MAAVDDLQFEEFGNAATSLTANPDATTVNIEDPGETPKHQPGSPRGSGREEDDELLGNDD
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 SDKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRP
       :::. ::   :....: :::: :::.:::::: ::.::::::::: ::.:::: ..:. :
CCDS58 SDKTELLA-GQKKSSP-FWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNP
                70         80        90       100       110        

     120       130       140       150       160       170         
pF1KB8 DLYGPFWICATLAFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTVAGISIYCYAWLVPLA
       ::::::::::::.:..:..:::.  : .  . . :: :.:.::..:.  :: ::::::::
CCDS58 DLYGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLA
      120       130       140       150       160       170        

     180       190       200       210       220       230         
pF1KB8 LWGFLRWRKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLS
       ::::: ::..    .  :.::: ::.::::::..:: ..::.::   ..:..  .:::.:
CCDS58 LWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGIS
      180       190       200       210       220       230        

     240       250       260       270       280       290         
pF1KB8 AAGLVFTLWPVVREDTRLVATVLLSVVVLLHALLAMGCKLYFFQSLPPENVAPPPQITSL
       .. :..:.::.::::.: :: . . ..:::: ::..::  :::..  :: .   :  :. 
CCDS58 GSLLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFFDA--PE-MDHLPTTTAT
      240       250       260       270       280          290     

     300       310      
pF1KB8 PSNIALSPTLPQSLAPS
       :.               
CCDS58 PNQTVAAAKSS      
         300            




316 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:42:04 2016 done: Fri Nov  4 13:42:04 2016
 Total Scan time:  2.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]