FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8616, 368 aa
  1>>>pF1KB8616 368 - 368 aa - 368 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3603+/-0.000329; mu= 7.3418+/- 0.021
 mean_var=123.7819+/-24.817, 0's: 0 Z-trim(118.3): 3  B-trim: 323 in 1/57
 Lambda= 0.115278
 statistics sampled from 31084 (31086) to 31084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.364), width:  16
 Scan time:  7.190

The best scores are:                                      opt bits E(85289)
NP_056347 (OMIM: 606485) protein GRINL1A isoform 1 ( 368) 2413 412.2 9.6e-115
NP_001018112 (OMIM: 606485) protein GRINL1A isofor ( 211) 1137 199.9 4.6e-51


>>NP_056347 (OMIM: 606485) protein GRINL1A isoform 1 [Ho  (368 aa)
 initn: 2413 init1: 2413 opt: 2413  Z-score: 2181.0  bits: 412.2 E(85289): 9.6e-115
Smith-Waterman score: 2413; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB8 MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AIAECEEVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AIAECEEVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 IKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 TQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDED
              310       320       330       340       350       360

               
pF1KB8 DDWSSDEF
       ::::::::
NP_056 DDWSSDEF
               

>>NP_001018112 (OMIM: 606485) protein GRINL1A isoform 2   (211 aa)
 initn: 1137 init1: 1137 opt: 1137  Z-score: 1037.8  bits: 199.9 E(85289): 4.6e-51
Smith-Waterman score: 1137; 96.7% identity (98.9% similar) in 180 aa overlap (189-368:32-211)

      160       170       180       190       200       210        
pF1KB8 RDRVPPSSEASEHHPRHRVSSQAEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNL
                                     . :. ..:::::::::::::::::::::::
NP_001 CSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNELQRITIADQGEQQSEENASTKNL
              10        20        30        40        50        60 

      220       230       240       250       260       270        
pF1KB8 TGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERR
              70        80        90       100       110       120 

      280       290       300       310       320       330        
pF1KB8 RRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNI
             130       140       150       160       170       180 

      340       350       360        
pF1KB8 KMRSYNPEGESSGRYREVRDEDDDWSSDEF
       ::::::::::::::::::::::::::::::
NP_001 KMRSYNPEGESSGRYREVRDEDDDWSSDEF
             190       200       210 




368 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:46:52 2016 done: Sat Nov  5 21:46:53 2016
 Total Scan time:  7.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]