FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8597, 254 aa
  1>>>pF1KB8597 254 - 254 aa - 254 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5820+/-0.000761; mu= 8.9790+/- 0.046
 mean_var=95.4993+/-18.987, 0's: 0 Z-trim(111.1): 15  B-trim: 167 in 1/52
 Lambda= 0.131242
 statistics sampled from 12122 (12136) to 12122 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.373), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS1791.1 CDC42EP3 gene_id:10602|Hs108|chr2       ( 254) 1697 330.9   5e-91
CCDS8099.1 CDC42EP2 gene_id:10435|Hs108|chr11      ( 210)  444 93.7 1.1e-19


>>CCDS1791.1 CDC42EP3 gene_id:10602|Hs108|chr2            (254 aa)
 initn: 1697 init1: 1697 opt: 1697  Z-score: 1747.7  bits: 330.9 E(32554): 5e-91
Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KB8 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GNYELLPGNQEKAHLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQALML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GNYELLPGNQEKAHLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQALML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSASQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSASQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDLGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDLGP
              190       200       210       220       230       240

              250    
pF1KB8 SLLDEVLNVMDKNK
       ::::::::::::::
CCDS17 SLLDEVLNVMDKNK
              250    

>>CCDS8099.1 CDC42EP2 gene_id:10435|Hs108|chr11           (210 aa)
 initn: 540 init1: 293 opt: 444  Z-score: 466.8  bits: 93.7 E(32554): 1.1e-19
Smith-Waterman score: 493; 43.1% identity (61.6% similar) in 255 aa overlap (1-253:1-202)

               10        20        30        40        50        60
pF1KB8 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ
       : .:.::::: .. .:::: ::::.:: :::::::::::::::::. :  :.::::::::
CCDS80 MSTKVPIYLKRGS-RKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQ
               10         20        30        40        50         

               70          80        90       100       110        
pF1KB8 GNYELLPGNQEKA--HLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQAL
       :...::::.. ..  . : :    .: :. ..    . . :::.::::::::.::: :::
CCDS80 GKFHLLPGTMVEGPEEDGTFDLPFQFTRTATVCGRELPDGPSPLLKNAISLPVIGGPQAL
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB8 MLPLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSA
        ::        . :   .: : :::  :         . :  :.:.:   :  :    ..
CCDS80 TLP--------TAQ---APPKPPRLHLET-------PQPSPQEGGSV---DI-WRIPETG
     120                  130              140          150        

      180       190       200       210       220       230        
pF1KB8 SQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDL
       : .:        .:.   :.  ::. :                  ::. ..:::::..::
CCDS80 SPNS--------GLT---PESGAEEPF------------------LSN-ASSLLSLHVDL
       160                  170                          180       

      240       250           
pF1KB8 GPSLLDEVLNVMDKNK       
       :::.::.::..::..        
CCDS80 GPSILDDVLQIMDQDLDSMQIPT
       190       200       210




254 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:34:36 2016 done: Sat Nov  5 01:34:37 2016
 Total Scan time:  2.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]