FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8590, 345 aa
  1>>>pF1KB8590 345 - 345 aa - 345 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7951+/- 0.001; mu= 13.4668+/- 0.059
 mean_var=66.9219+/-13.901, 0's: 0 Z-trim(103.8): 27  B-trim: 0 in 0/51
 Lambda= 0.156780
 statistics sampled from 7596 (7608) to 7596 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.234), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS41542.1 GHITM gene_id:27069|Hs108|chr10        ( 345) 2238 515.3  3e-146


>>CCDS41542.1 GHITM gene_id:27069|Hs108|chr10             (345 aa)
 initn: 2238 init1: 2238 opt: 2238  Z-score: 2739.2  bits: 515.3 E(32554): 3e-146
Smith-Waterman score: 2238; 99.1% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KB8 MLAVRLVCLRTLPSRVFHPAFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGRTGQ
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLAARLVCLRTLPSRVFHPAFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGRTGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ELKEAALEPSMEKMFKIDQMGRWFVAGGAAVGLGALCYYGLGLSNEIGAIEKAVIWPRYV
       :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::.::
CCDS41 ELKEAALEPSMEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGLSNEIGAIEKAVIWPQYV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KDRIHSTYMYLAGSIGLTALSAIAISRTPVLMNFMMRGSWVTIGVTFAAMVGAGMLVRSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KDRIHSTYMYLAGSIGLTALSAIAISRTPVLMNFMMRGSWVTIGVTFAAMVGAGMLVRSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAMYGGLVLFSMFLLYDTQKVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAMYGGLVLFSMFLLYDTQKVIK
              250       260       270       280       290       300

              310       320       330       340     
pF1KB8 RAEVSPMYGVQKYDPINSMLSIYMDTLNIFMRVATMLATGGNRKK
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RAEVSPMYGVQKYDPINSMLSIYMDTLNIFMRVATMLATGGNRKK
              310       320       330       340     




345 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:36:32 2016 done: Fri Nov  4 13:36:32 2016
 Total Scan time:  2.540 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]