FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8587, 237 aa
  1>>>pF1KB8587 237 - 237 aa - 237 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3891+/-0.000335; mu= 14.4776+/- 0.021
 mean_var=73.2943+/-14.889, 0's: 0 Z-trim(116.4): 5  B-trim: 698 in 1/50
 Lambda= 0.149809
 statistics sampled from 27600 (27605) to 27600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.324), width:  16
 Scan time:  5.240

The best scores are:                                      opt bits E(85289)
NP_056338 (OMIM: 607149) oligoribonuclease, mitoch ( 237) 1579 350.0 2.1e-96


>>NP_056338 (OMIM: 607149) oligoribonuclease, mitochondr  (237 aa)
 initn: 1579 init1: 1579 opt: 1579  Z-score: 1851.8  bits: 350.0 E(85289): 2.1e-96
Smith-Waterman score: 1579; 99.6% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB8 MLGGSLGSRLLRGVGGSHGRFGARGVREGGAAMAAGESMAQRMVWVDLEMTGLDIEKDQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MLGGSLGSRLLRGVGGSHGRFGARGVREGGAAMAAGESMAQRMVWVDLEMTGLDIEKDQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGRSGLTKAVKESTITLQQA
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
NP_056 IEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWY
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KB8 PEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKIDEKKRKIIENGENEKTVS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKIDEKKRKIIENGENEKTVS
              190       200       210       220       230       




237 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:34:28 2016 done: Fri Nov  4 13:34:29 2016
 Total Scan time:  5.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]