FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8587, 237 aa
  1>>>pF1KB8587 237 - 237 aa - 237 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7389+/-0.000732; mu= 12.5149+/- 0.044
 mean_var=70.4299+/-14.279, 0's: 0 Z-trim(109.6): 12  B-trim: 358 in 1/49
 Lambda= 0.152826
 statistics sampled from 10972 (10975) to 10972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.337), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS8371.1 REXO2 gene_id:25996|Hs108|chr11         ( 237) 1579 356.6   8e-99


>>CCDS8371.1 REXO2 gene_id:25996|Hs108|chr11              (237 aa)
 initn: 1579 init1: 1579 opt: 1579  Z-score: 1887.7  bits: 356.6 E(32554): 8e-99
Smith-Waterman score: 1579; 99.6% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB8 MLGGSLGSRLLRGVGGSHGRFGARGVREGGAAMAAGESMAQRMVWVDLEMTGLDIEKDQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLGGSLGSRLLRGVGGSHGRFGARGVREGGAAMAAGESMAQRMVWVDLEMTGLDIEKDQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGRSGLTKAVKESTITLQQA
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS83 IEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWY
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KB8 PEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKIDEKKRKIIENGENEKTVS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKIDEKKRKIIENGENEKTVS
              190       200       210       220       230       




237 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:34:27 2016 done: Fri Nov  4 13:34:28 2016
 Total Scan time:  2.160 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]