FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8581, 522 aa
  1>>>pF1KB8581 522 - 522 aa - 522 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.0442+/-0.00113; mu= -12.2891+/- 0.067
 mean_var=318.2660+/-68.156, 0's: 0 Z-trim(112.7): 48  B-trim: 581 in 1/51
 Lambda= 0.071892
 statistics sampled from 13426 (13457) to 13426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.413), width:  16
 Scan time:  3.790

The best scores are:                                      opt bits E(32554)
CCDS12788.1 NUP62 gene_id:23636|Hs108|chr19        ( 522) 3306 356.5 4.2e-98
CCDS14527.1 NUP62CL gene_id:54830|Hs108|chrX       ( 184)  546 70.0 2.6e-12


>>CCDS12788.1 NUP62 gene_id:23636|Hs108|chr19             (522 aa)
 initn: 3306 init1: 3306 opt: 3306  Z-score: 1874.7  bits: 356.5 E(32554): 4.2e-98
Smith-Waterman score: 3306; 99.8% identity (100.0% similar) in 522 aa overlap (1-522:1-522)

               10        20        30        40        50        60
pF1KB8 MSGFNFGGTGAPTGGFTFGTAKTATTTPATGFSFSTSGTGGFNFGAPFQPATSTPSTGLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSGFNFGGTGAPTGGFTFGTAKTATTTPATGFSFSTSGTGGFNFGAPFQPATSTPSTGLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SLATQTPATQTTGFTFGTATLASGGTGFSLGIGASKLNLSNTAATPAMANPSGFGLGSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SLATQTPATQTTGFTFGTATLASGGTGFSLGIGASKLNLSNTAATPAMANPSGFGLGSSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LTNAISSTVTSSQGTAPTGFVFGPSTTSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTNAISSTVTSSQGTAPTGFVFGPSTTSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLSLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLSLC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 TPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPA
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS12 TPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 GIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSLELEDQERHFLQQATQVNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSLELEDQERHFLQQATQVNA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 WDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEELVKEQSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEELVKEQSGT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 IYLQHADEEREKTYKLAENIDAQLKRMAQDLKDIIEHLNTSGAPADTSDPLQQICKILNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IYLQHADEEREKTYKLAENIDAQLKRMAQDLKDIIEHLNTSGAPADTSDPLQQICKILNA
              430       440       450       460       470       480

              490       500       510       520  
pF1KB8 HMDSLQWIDQNSALLQRKVEEVTKVCEGRRKEQERSFRITFD
       ::::::::::::::::::::::::::::::::::::::::::
CCDS12 HMDSLQWIDQNSALLQRKVEEVTKVCEGRRKEQERSFRITFD
              490       500       510       520  

>>CCDS14527.1 NUP62CL gene_id:54830|Hs108|chrX            (184 aa)
 initn: 486 init1: 486 opt: 546  Z-score: 334.6  bits: 70.0 E(32554): 2.6e-12
Smith-Waterman score: 552; 56.6% identity (76.4% similar) in 182 aa overlap (263-438:14-183)

            240       250       260       270       280        290 
pF1KB8 ATTGLSLCTPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTTSSS-TTGFA
                                     :: : : ::::..::: ::.:... :.::.
CCDS14                  MQFTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFT
                                10        20        30        40   

             300           310       320       330       340       
pF1KB8 LNLKPLAPAG----IPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSLELEDQ
       .: . :   :    .: .....:.: :            .:::..::.:::.:.::::::
CCDS14 VNQNQLLSRGFENLVPYTSTVSVVATP------------VMTYGHLEGLINEWNLELEDQ
            50        60        70                    80        90 

       350       360       370       380       390       400       
pF1KB8 ERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLL
       :..:: :::::::::.::::::: :  :: ::.:::::::::.::::::::::.::: ::
CCDS14 EKYFLLQATQVNAWDHTLIENGEMIRILHGEVNKVKLDQKRLEQELDFILSQQQELEFLL
             100       110       120       130       140       150 

       410       420       430        440       450       460      
pF1KB8 SPLEELVKEQSGTIYLQHADEER-EKTYKLAENIDAQLKRMAQDLKDIIEHLNTSGAPAD
       . ::: ...:::  ::: ::::. : . . ::                            
CCDS14 TYLEESTRDQSGLHYLQDADEEHVEISTRSAEF                           
             160       170       180                               

        470       480       490       500       510       520  
pF1KB8 TSDPLQQICKILNAHMDSLQWIDQNSALLQRKVEEVTKVCEGRRKEQERSFRITFD




522 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:34:01 2016 done: Sat Nov  5 01:34:02 2016
 Total Scan time:  3.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]