Result of FASTA (omim) for
pF1KB8576
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8576, 186 aa
1>>>pF1KB8576 186 - 186 aa - 186 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4006+/-0.000392; mu= 18.5225+/- 0.025
mean_var=85.9536+/-18.574, 0's: 0 Z-trim(113.3): 239 B-trim: 630 in 1/49
Lambda= 0.138338
statistics sampled from 22259 (22588) to 22259 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.265), width: 16
Scan time: 5.740
The best scores are: opt bits E(85289)
XP_016862800 (OMIM: 209900,268000,600151,608845,61 ( 186) 1215 252.0 4e-67
NP_001265222 (OMIM: 209900,268000,600151,608845,61 ( 186) 1215 252.0 4e-67
NP_816931 (OMIM: 209900,268000,600151,608845,61357 ( 186) 1215 252.0 4e-67
NP_115522 (OMIM: 209900,268000,600151,608845,61357 ( 186) 1215 252.0 4e-67
NP_001310442 (OMIM: 209900,268000,600151,608845,61 ( 193) 1173 243.7 1.4e-64
XP_016862801 (OMIM: 209900,268000,600151,608845,61 ( 159) 1032 215.4 3.6e-56
NP_001310443 (OMIM: 209900,268000,600151,608845,61 ( 159) 1032 215.4 3.6e-56
XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 181) 467 102.7 3.4e-22
NP_001650 (OMIM: 103190) ADP-ribosylation factor 3 ( 181) 467 102.7 3.4e-22
NP_001019399 (OMIM: 103180) ADP-ribosylation facto ( 181) 463 101.9 5.9e-22
NP_001019398 (OMIM: 103180) ADP-ribosylation facto ( 181) 463 101.9 5.9e-22
NP_001019397 (OMIM: 103180) ADP-ribosylation facto ( 181) 463 101.9 5.9e-22
NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 ( 181) 463 101.9 5.9e-22
NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 ( 175) 443 97.9 9.3e-21
NP_001651 (OMIM: 601177) ADP-ribosylation factor 4 ( 180) 436 96.5 2.5e-20
NP_001653 (OMIM: 103188) ADP-ribosylation factor 5 ( 180) 423 93.9 1.5e-19
NP_848930 (OMIM: 608909) ADP-ribosylation factor-l ( 179) 422 93.7 1.7e-19
NP_004302 (OMIM: 604695) ADP-ribosylation factor-l ( 182) 421 93.6 2e-19
XP_016871749 (OMIM: 604695) PREDICTED: ADP-ribosyl ( 182) 421 93.6 2e-19
NP_036229 (OMIM: 608960) ADP-ribosylation factor-l ( 179) 420 93.3 2.3e-19
XP_005248554 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 398) 422 94.2 2.8e-19
NP_001647 (OMIM: 601747) E3 ubiquitin-protein liga ( 574) 422 94.4 3.5e-19
NP_001168 (OMIM: 603425) ADP-ribosylation factor-l ( 181) 411 91.6 7.9e-19
NP_001658 (OMIM: 601175) ADP-ribosylation factor-l ( 184) 401 89.6 3.2e-18
NP_001032241 (OMIM: 604786) ADP-ribosylation facto ( 200) 382 85.8 4.6e-17
NP_005729 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 382 85.8 4.6e-17
NP_997625 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 382 85.8 4.6e-17
NP_001182325 (OMIM: 604786) ADP-ribosylation facto ( 200) 382 85.8 4.6e-17
XP_005252458 (OMIM: 608909) PREDICTED: ADP-ribosyl ( 142) 378 84.8 6.5e-17
NP_817114 (OMIM: 608960) ADP-ribosylation factor-l ( 142) 367 82.6 3e-16
NP_001032251 (OMIM: 608960) ADP-ribosylation facto ( 142) 367 82.6 3e-16
XP_016864933 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 569) 358 81.6 2.4e-15
NP_150230 (OMIM: 601747) E3 ubiquitin-protein liga ( 569) 358 81.6 2.4e-15
XP_005266310 (OMIM: 609351) PREDICTED: ADP-ribosyl ( 196) 348 79.0 5.1e-15
NP_612459 (OMIM: 609351) ADP-ribosylation factor-l ( 196) 348 79.0 5.1e-15
NP_079323 (OMIM: 614439) ADP-ribosylation factor-l ( 192) 343 78.0 1e-14
NP_150231 (OMIM: 601747) E3 ubiquitin-protein liga ( 546) 341 78.2 2.5e-14
NP_001287997 (OMIM: 603425) ADP-ribosylation facto ( 135) 332 75.6 3.7e-14
NP_878899 (OMIM: 608922,612291) ADP-ribosylation f ( 428) 336 77.1 4.3e-14
NP_001167621 (OMIM: 608922,612291) ADP-ribosylatio ( 428) 336 77.1 4.3e-14
XP_006719454 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 137) 325 74.2 9.8e-14
NP_060654 (OMIM: 616596) ADP-ribosylation factor-l ( 186) 326 74.6 1e-13
XP_011510837 (OMIM: 608922,612291) PREDICTED: ADP- ( 403) 328 75.4 1.2e-13
XP_016856722 (OMIM: 103180) PREDICTED: ADP-ribosyl ( 212) 321 73.7 2.2e-13
NP_005728 (OMIM: 604787) ADP-ribosylation factor-l ( 192) 318 73.0 3.2e-13
NP_001269360 (OMIM: 604787) ADP-ribosylation facto ( 201) 318 73.1 3.3e-13
NP_620150 (OMIM: 616597) ADP-ribosylation factor-l ( 186) 315 72.4 4.7e-13
NP_001652 (OMIM: 600732) ADP-ribosylation factor-l ( 201) 300 69.5 3.9e-12
XP_011523084 (OMIM: 600732) PREDICTED: ADP-ribosyl ( 201) 300 69.5 3.9e-12
XP_011510836 (OMIM: 608922,612291) PREDICTED: ADP- ( 413) 300 69.9 6.1e-12
>>XP_016862800 (OMIM: 209900,268000,600151,608845,613575 (186 aa)
initn: 1215 init1: 1215 opt: 1215 Z-score: 1326.1 bits: 252.0 E(85289): 4e-67
Smith-Waterman score: 1215; 99.5% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
XP_016 MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
130 140 150 160 170 180
pF1KB8 IQTVKT
::::::
XP_016 IQTVKT
>>NP_001265222 (OMIM: 209900,268000,600151,608845,613575 (186 aa)
initn: 1215 init1: 1215 opt: 1215 Z-score: 1326.1 bits: 252.0 E(85289): 4e-67
Smith-Waterman score: 1215; 99.5% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_001 MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
130 140 150 160 170 180
pF1KB8 IQTVKT
::::::
NP_001 IQTVKT
>>NP_816931 (OMIM: 209900,268000,600151,608845,613575) A (186 aa)
initn: 1215 init1: 1215 opt: 1215 Z-score: 1326.1 bits: 252.0 E(85289): 4e-67
Smith-Waterman score: 1215; 99.5% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_816 MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_816 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_816 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
130 140 150 160 170 180
pF1KB8 IQTVKT
::::::
NP_816 IQTVKT
>>NP_115522 (OMIM: 209900,268000,600151,608845,613575) A (186 aa)
initn: 1215 init1: 1215 opt: 1215 Z-score: 1326.1 bits: 252.0 E(85289): 4e-67
Smith-Waterman score: 1215; 99.5% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_115 MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
130 140 150 160 170 180
pF1KB8 IQTVKT
::::::
NP_115 IQTVKT
>>NP_001310442 (OMIM: 209900,268000,600151,608845,613575 (193 aa)
initn: 1187 init1: 1171 opt: 1173 Z-score: 1280.6 bits: 243.7 E(85289): 1.4e-64
Smith-Waterman score: 1173; 97.3% identity (99.5% similar) in 184 aa overlap (1-183:1-184)
10 20 30 40 50 60
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_001 MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..
NP_001 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQEK
130 140 150 160 170 180
pF1KB8 -IQTVKT
::.
NP_001 TIQSDPDCEDMKR
190
>>XP_016862801 (OMIM: 209900,268000,600151,608845,613575 (159 aa)
initn: 1032 init1: 1032 opt: 1032 Z-score: 1129.5 bits: 215.4 E(85289): 3.6e-56
Smith-Waterman score: 1032; 99.4% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
XP_016 MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
:::::::::::::::::::::::::::::::::::::::
XP_016 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHI
130 140 150
pF1KB8 IQTVKT
>>NP_001310443 (OMIM: 209900,268000,600151,608845,613575 (159 aa)
initn: 1032 init1: 1032 opt: 1032 Z-score: 1129.5 bits: 215.4 E(85289): 3.6e-56
Smith-Waterman score: 1032; 99.4% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_001 MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
:::::::::::::::::::::::::::::::::::::::
NP_001 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHI
130 140 150
pF1KB8 IQTVKT
>>XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosylatio (181 aa)
initn: 475 init1: 229 opt: 467 Z-score: 519.4 bits: 102.7 E(85289): 3.4e-22
Smith-Waterman score: 467; 41.9% identity (75.4% similar) in 179 aa overlap (7-185:9-181)
10 20 30 40 50
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF
:. :.: :::.. : .::: .:::::. ::: .. . .:::::..:
XP_005 MGNIFGNLLKSLIG--KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETV
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI
. ...::::.:..:: . : ::.::... :..:::.::.:: :. :.::: .: . ..
XP_005 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 KHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQ
: .: ::::.:: .:........ : :.... . :.: :. : .:.:: ::.:::
XP_005 --RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLA
120 130 140 150 160 170
180
pF1KB8 DQIQTVKT
.:... :
XP_005 NQLKNKK
180
>>NP_001650 (OMIM: 103190) ADP-ribosylation factor 3 [Ho (181 aa)
initn: 475 init1: 229 opt: 467 Z-score: 519.4 bits: 102.7 E(85289): 3.4e-22
Smith-Waterman score: 467; 41.9% identity (75.4% similar) in 179 aa overlap (7-185:9-181)
10 20 30 40 50
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF
:. :.: :::.. : .::: .:::::. ::: .. . .:::::..:
NP_001 MGNIFGNLLKSLIG--KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETV
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI
. ...::::.:..:: . : ::.::... :..:::.::.:: :. :.::: .: . ..
NP_001 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 KHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQ
: .: ::::.:: .:........ : :.... . :.: :. : .:.:: ::.:::
NP_001 --RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLA
120 130 140 150 160 170
180
pF1KB8 DQIQTVKT
.:... :
NP_001 NQLKNKK
180
>>NP_001019399 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 475 init1: 229 opt: 463 Z-score: 515.1 bits: 101.9 E(85289): 5.9e-22
Smith-Waterman score: 463; 42.1% identity (76.6% similar) in 171 aa overlap (15-185:15-181)
10 20 30 40 50 60
pF1KB8 MGLLDRLSVLLGLKKKEVHALCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS
:::.. : .::: .:::::. ::: .. . .:::::..: .
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEY
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH
...::::.:..:: . : ::.::... :..:::.::.:: :. :.::: .: . ..
NP_001 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ
: .: ::::.:: .:........ : :.... . :.: :. : .:.:: ::.:::..:
NP_001 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ
120 130 140 150 160 170
pF1KB8 IQTVKT
... :
NP_001 LRNQK
180
186 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:29:25 2016 done: Fri Nov 4 13:29:26 2016
Total Scan time: 5.740 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]