FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8521, 956 aa
  1>>>pF1KB8521 956 - 956 aa - 956 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.5524+/-0.0011; mu= -10.3083+/- 0.066
 mean_var=440.9331+/-89.790, 0's: 0 Z-trim(115.5): 48  B-trim: 410 in 1/53
 Lambda= 0.061078
 statistics sampled from 16045 (16083) to 16045 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.494), width:  16
 Scan time:  5.480

The best scores are:                                      opt bits E(32554)
CCDS32875.1 CHAF1A gene_id:10036|Hs108|chr19       ( 956) 6459 584.1 4.3e-166


>>CCDS32875.1 CHAF1A gene_id:10036|Hs108|chr19            (956 aa)
 initn: 6459 init1: 6459 opt: 6459  Z-score: 3095.3  bits: 584.1 E(32554): 4.3e-166
Smith-Waterman score: 6459; 100.0% identity (100.0% similar) in 956 aa overlap (1-956:1-956)

               10        20        30        40        50        60
pF1KB8 MLEELECGAPGARGAATAMDCKDRPAFPVKKLIQARLPFKRLNLVPKGKADDMSDDQGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLEELECGAPGARGAATAMDCKDRPAFPVKKLIQARLPFKRLNLVPKGKADDMSDDQGTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VQSKSPDLEASLDTLENNCHVGSDIDFRPKLVNGKGPLDNFLRNRIETSIGQSTVIIDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VQSKSPDLEASLDTLENNCHVGSDIDFRPKLVNGKGPLDNFLRNRIETSIGQSTVIIDLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EDSNEQPDSLVDHNKLNSEASPSREAINGQREDTGDQQGLLKAIQNDKLAFPGETLSDIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EDSNEQPDSLVDHNKLNSEASPSREAINGQREDTGDQQGLLKAIQNDKLAFPGETLSDIP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CKTEEEGVGCGGAGRRGDSQECSPRSCPELTSGPRMCPRKEQDSWSEAGGILFKGKVPMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CKTEEEGVGCGGAGRRGDSQECSPRSCPELTSGPRMCPRKEQDSWSEAGGILFKGKVPMV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 VLQDILAVRPPQIKSLPATPQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VLQDILAVRPPQIKSLPATPQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 APPKQHSSTSPFPTSTPLRRITKKFVKGSTEKNKLRLQRDQERLGKQLKLRAEREEKEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 APPKQHSSTSPFPTSTPLRRITKKFVKGSTEKNKLRLQRDQERLGKQLKLRAEREEKEKL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KEEAKRAKEEAKKKKEEEKELKEKERREKREKDEKEKAEKQRLKEERRKERQEALEAKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KEEAKRAKEEAKKKKEEEKELKEKERREKREKDEKEKAEKQRLKEERRKERQEALEAKLE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EKRKKEEEKRLREEEKRIKAEKAEITRFFQKPKTPQAPKTLAGSCGKFAPFEIKEHMVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EKRKKEEEKRLREEEKRIKAEKAEITRFFQKPKTPQAPKTLAGSCGKFAPFEIKEHMVLA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 PRRRTAFHPDLCSQLDQLLQQQSGEFSFLKDLKGRQPLRSGPTHVSTRNADIFNSDVVIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PRRRTAFHPDLCSQLDQLLQQQSGEFSFLKDLKGRQPLRSGPTHVSTRNADIFNSDVVIV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 ERGKGDGVPERRKFGRMKLLQFCENHRPAYWGTWNKKTALIRARDPWAQDTKLLDYEVDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ERGKGDGVPERRKFGRMKLLQFCENHRPAYWGTWNKKTALIRARDPWAQDTKLLDYEVDS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 DEEWEEEEPGESLSHSEGDDDDDMGEDEDEDDGFFVPHGYLSEDEGVTEECADPENHKVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DEEWEEEEPGESLSHSEGDDDDDMGEDEDEDDGFFVPHGYLSEDEGVTEECADPENHKVR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 QKLKAKEWDEFLAKGKRFRVLQPVKIGCVWAADRDCAGDDLKVLQQFAACFLETLPAQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QKLKAKEWDEFLAKGKRFRVLQPVKIGCVWAADRDCAGDDLKVLQQFAACFLETLPAQEE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 QTPKASKRERRDEQILAQLLPLLHGNVNGSKVIIREFQEHCRRGLLSNHTGSPRSPSTTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QTPKASKRERRDEQILAQLLPLLHGNVNGSKVIIREFQEHCRRGLLSNHTGSPRSPSTTY
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 LHTPTPSEDAAIPSKSRLKRLISENSVYEKRPDFRMCWYVHPQVLQSFQQEHLPVPCQWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LHTPTPSEDAAIPSKSRLKRLISENSVYEKRPDFRMCWYVHPQVLQSFQQEHLPVPCQWS
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB8 YVTSVPSAPKEDSGSVPSTGPSQGTPISLKRKSAGSMCITQFMKKRRHDGQIGAEDMDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YVTSVPSAPKEDSGSVPSTGPSQGTPISLKRKSAGSMCITQFMKKRRHDGQIGAEDMDGF
              850       860       870       880       890       900

              910       920       930       940       950      
pF1KB8 QADTEEEEEEEGDCMIVDVPDAAEVQAPCGAASGAGGGVGVDTGKATLTASPLGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QADTEEEEEEEGDCMIVDVPDAAEVQAPCGAASGAGGGVGVDTGKATLTASPLGAS
              910       920       930       940       950      




956 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:12:20 2016 done: Sat Nov  5 16:12:21 2016
 Total Scan time:  5.480 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]