Result of FASTA (ccds) for
pF1KB8505
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8505, 917 aa
1>>>pF1KB8505 917 - 917 aa - 917 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9308+/-0.00135; mu= 17.4125+/- 0.082
mean_var=68.9533+/-13.915, 0's: 0 Z-trim(99.5): 47 B-trim: 0 in 0/51
Lambda= 0.154453
statistics sampled from 5747 (5752) to 5747 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.51), E-opt: 0.2 (0.177), width: 16
Scan time: 3.830
The best scores are: opt bits E(32554)
CCDS43968.1 TEX11 gene_id:56159|Hs108|chrX ( 925) 6006 1348.4 0
CCDS35323.1 TEX11 gene_id:56159|Hs108|chrX ( 940) 5977 1342.0 0
>>CCDS43968.1 TEX11 gene_id:56159|Hs108|chrX (925 aa)
initn: 6006 init1: 6006 opt: 6006 Z-score: 7226.6 bits: 1348.4 E(32554): 0
Smith-Waterman score: 6006; 99.8% identity (99.9% similar) in 917 aa overlap (1-917:9-925)
10 20 30 40 50
pF1KB8 MDFKEVVEILVTNDNSPNIPEAIDRLFSDIANINRESMAEITDIQIEEMAVN
:::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDNDDFFSMDFKEVVENLVTNDNSPNIPEAIDRLFSDIANINRESMAEITDIQIEEMAVN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LWNWALTIGGGWLVNEEQKIRLHYVACKLLSMCEASFASEQSIQRLIMMNMRIGKEWLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LWNWALTIGGGWLVNEEQKIRLHYVACKLLSMCEASFASEQSIQRLIMMNMRIGKEWLDA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 GNFLIADECFQAAVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GNFLIADECFQAAVASLEQLYVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 DFQRASMCVLQCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DFQRASMCVLQCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEESSFWLSQSYDIGKMD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 KKSTGPEMLAKVLRLLATNYLDWDDTKYYDKALNAVNLANKEHLSSPGLFLKMKILLKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KKSTGPEMLAKVLRLLATNYLDWDDTKYYDKALNAVNLANKEHLSSPGLFLKMKILLKGE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 TSNEELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSENIGKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TSNEELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSENIGKVL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB8 ILHTDMLLQRKEELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ILHTDMLLQRKEELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTD
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB8 ALQWYYYSLRFYSTDKMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQF
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ALQWYYYSLRFYSTDEMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQF
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB8 YIFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YIFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQ
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB8 IVAEKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IVAEKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB8 KLSQPFGEEALSLESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KLSQPFGEEALSLESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQV
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB8 ILIARKTCLLMAVAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ILIARKTCLLMAVAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDS
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB8 CEKLLLLYEFEVRAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CEKLLLLYEFEVRAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKA
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB8 LKKALLLYKKEEPIDISQYSKCMHNLVNLSVPDGASNVELCPLEEVWGYFEDALSHISRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LKKALLLYKKEEPIDISQYSKCMHNLVNLSVPDGASNVELCPLEEVWGYFEDALSHISRT
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB8 KDYPEMEILWLMVKSWNTGVLMFSRSKYASAEKWCGLALRFLNHLTSFKESYETQMNMLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KDYPEMEILWLMVKSWNTGVLMFSRSKYASAEKWCGLALRFLNHLTSFKESYETQMNMLY
850 860 870 880 890 900
900 910
pF1KB8 SQLVEALSNNKGPVFHEHGYWSKSD
:::::::::::::::::::::::::
CCDS43 SQLVEALSNNKGPVFHEHGYWSKSD
910 920
>>CCDS35323.1 TEX11 gene_id:56159|Hs108|chrX (940 aa)
initn: 5977 init1: 5977 opt: 5977 Z-score: 7191.6 bits: 1342.0 E(32554): 0
Smith-Waterman score: 5977; 99.8% identity (99.9% similar) in 913 aa overlap (5-917:28-940)
10 20 30
pF1KB8 MDFKEVVEILVTNDNSPNIPEAIDRLFSDIANINRES
:::: ::::::::::::::::::::::::::::
CCDS35 MISAHCNLRLLCSSDSSASASQVAGTTEVVENLVTNDNSPNIPEAIDRLFSDIANINRES
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 MAEITDIQIEEMAVNLWNWALTIGGGWLVNEEQKIRLHYVACKLLSMCEASFASEQSIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAEITDIQIEEMAVNLWNWALTIGGGWLVNEEQKIRLHYVACKLLSMCEASFASEQSIQR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 LIMMNMRIGKEWLDAGNFLIADECFQAAVASLEQLYVKLIQRSSPEADLTMEKITVESDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LIMMNMRIGKEWLDAGNFLIADECFQAAVASLEQLYVKLIQRSSPEADLTMEKITVESDH
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 FRVLSYQAESAVAQGDFQRASMCVLQCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FRVLSYQAESAVAQGDFQRASMCVLQCKDMLMRLPQMTSSLHHLCYNFGVETQKNNKYEE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 SSFWLSQSYDIGKMDKKSTGPEMLAKVLRLLATNYLDWDDTKYYDKALNAVNLANKEHLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SSFWLSQSYDIGKMDKKSTGPEMLAKVLRLLATNYLDWDDTKYYDKALNAVNLANKEHLS
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 SPGLFLKMKILLKGETSNEELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SPGLFLKMKILLKGETSNEELLEAVMEILHLDMPLDFCLNIAKLLMDHERESVGFHFLTI
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB8 IHERFKSSENIGKVLILHTDMLLQRKEELLAKEKIEEIFLAHQTGRQLTAESMNWLHNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IHERFKSSENIGKVLILHTDMLLQRKEELLAKEKIEEIFLAHQTGRQLTAESMNWLHNIL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB8 WRQAASSFEVQNYTDALQWYYYSLRFYSTDKMDLDFTKLQRNMACCYLNLQQLDKAKEAV
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS35 WRQAASSFEVQNYTDALQWYYYSLRFYSTDEMDLDFTKLQRNMACCYLNLQQLDKAKEAV
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB8 AEAERHDPRNVFTQFYIFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AEAERHDPRNVFTQFYIFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTM
490 500 510 520 530 540
520 530 540 550 560 570
pF1KB8 LLSLAAQFALENGQQIVAEKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LLSLAAQFALENGQQIVAEKALEYLAQHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKK
550 560 570 580 590 600
580 590 600 610 620 630
pF1KB8 KEMDRLLTCLNRAFVKLSQPFGEEALSLESRANEAQWFRKTAWNLAVQCDKDPVMMREFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KEMDRLLTCLNRAFVKLSQPFGEEALSLESRANEAQWFRKTAWNLAVQCDKDPVMMREFF
610 620 630 640 650 660
640 650 660 670 680 690
pF1KB8 ILSYKMSQFCPSDQVILIARKTCLLMAVAVDLEQGRKASTAFEQTMFLSRALEEIQTCND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ILSYKMSQFCPSDQVILIARKTCLLMAVAVDLEQGRKASTAFEQTMFLSRALEEIQTCND
670 680 690 700 710 720
700 710 720 730 740 750
pF1KB8 IHNFLKQTGTFSNDSCEKLLLLYEFEVRAKLNDPLLESFLESVWELPHLETKTFETIAII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IHNFLKQTGTFSNDSCEKLLLLYEFEVRAKLNDPLLESFLESVWELPHLETKTFETIAII
730 740 750 760 770 780
760 770 780 790 800 810
pF1KB8 AMEKPAHYPLIALKALKKALLLYKKEEPIDISQYSKCMHNLVNLSVPDGASNVELCPLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AMEKPAHYPLIALKALKKALLLYKKEEPIDISQYSKCMHNLVNLSVPDGASNVELCPLEE
790 800 810 820 830 840
820 830 840 850 860 870
pF1KB8 VWGYFEDALSHISRTKDYPEMEILWLMVKSWNTGVLMFSRSKYASAEKWCGLALRFLNHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VWGYFEDALSHISRTKDYPEMEILWLMVKSWNTGVLMFSRSKYASAEKWCGLALRFLNHL
850 860 870 880 890 900
880 890 900 910
pF1KB8 TSFKESYETQMNMLYSQLVEALSNNKGPVFHEHGYWSKSD
::::::::::::::::::::::::::::::::::::::::
CCDS35 TSFKESYETQMNMLYSQLVEALSNNKGPVFHEHGYWSKSD
910 920 930 940
917 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:37:25 2016 done: Sat Nov 5 07:37:26 2016
Total Scan time: 3.830 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]