Result of FASTA (ccds) for
pF1KB8503
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8503, 937 aa
1>>>pF1KB8503 937 - 937 aa - 937 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6053+/-0.000929; mu= 15.0307+/- 0.056
mean_var=89.7910+/-17.861, 0's: 0 Z-trim(105.5): 24 B-trim: 0 in 0/54
Lambda= 0.135350
statistics sampled from 8435 (8444) to 8435 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.259), width: 16
Scan time: 4.510
The best scores are: opt bits E(32554)
CCDS46303.1 AFTPH gene_id:54812|Hs108|chr2 ( 936) 6162 1214.0 0
CCDS1878.1 AFTPH gene_id:54812|Hs108|chr2 ( 909) 5449 1074.8 0
>>CCDS46303.1 AFTPH gene_id:54812|Hs108|chr2 (936 aa)
initn: 6007 init1: 5870 opt: 6162 Z-score: 6499.8 bits: 1214.0 E(32554): 0
Smith-Waterman score: 6162; 99.9% identity (99.9% similar) in 937 aa overlap (1-937:1-936)
10 20 30 40 50 60
pF1KB8 MEPDIIRMYSSSPPPLDNGAEDDDDDEFGEFGGFSEVSPSGVGFVDFDTPDYTRPKEEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MEPDIIRMYSSSPPPLDNGAEDDDDDEFGEFGGFSEVSPSGVGFVDFDTPDYTRPKEEFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PSNHFMPIHEFSENVDSLTSFKSIKNGNDKDITAELSAPVKGQSDVLLSTTSKEIISSEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PSNHFMPIHEFSENVDSLTSFKSIKNGNDKDITAELSAPVKGQSDVLLSTTSKEIISSEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LATSIDGMERPGNLNKVVEQRQNVGTLESFSPGDFRTNMNVVHQNKQLESCNGEKPPCLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LATSIDGMERPGNLNKVVEQRQNVGTLESFSPGDFRTNMNVVHQNKQLESCNGEKPPCLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ILTNGFAVLETVNPQGTDDLDNVADSKGRKPLSTHSTEYNLDSVPSPAEEFADFATFSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILTNGFAVLETVNPQGTDDLDNVADSKGRKPLSTHSTEYNLDSVPSPAEEFADFATFSKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ERIQLEEIECAVLNDREALTIRENNKINRVNELNSVKEVALGRSLDNKGDTDGEDQVCVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ERIQLEEIECAVLNDREALTIRENNKINRVNELNSVKEVALGRSLDNKGDTDGEDQVCVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 EISIVTNRGFSVEKQGLPTLQQDEFLQSGVQSKAWSLVDSADNSEAIRREQCKTEEKLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EISIVTNRGFSVEKQGLPTLQQDEFLQSGVQSKAWSLVDSADNSEAIRREQCKTEEKLDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 LTSKCAHLCMDSVKTSDDEVGSPKEESRKFTNFQSPNIDPTEENDLDDSLSVKNGDSSND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LTSKCAHLCMDSVKTSDDEVGSPKEESRKFTNFQSPNIDPTEENDLDDSLSVKNGDSSND
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 FVTCNDINEDDFGDFGDFGSASGSTPPFVTGTQDSMSDATFEESSEHFPHFSEPGDDFGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FVTCNDINEDDFGDFGDFGSASGSTPPFVTGTQDSMSDATFEESSEHFPHFSEPGDDFGE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 FGDINAVSCQEETILTKSDLKQTSDNLSEECQLARKSSGTGTEPVAKLKNGQEGEIGHFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FGDINAVSCQEETILTKSDLKQTSDNLSEECQLARKSSGTGTEPVAKLKNGQEGEIGHFD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 SVPNIQDDCNGFQDSDDFADFSSAGPSQVVDWNAFEDEQKDSCSWAAFGDQQATESHHRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVPNIQDDCNGFQDSDDFADFSSAGPSQVVDWNAFEDEQKDSCSWAAFGDQQATESHHRK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 EAWQSHRTDENIDTPGTPKTHSVPSATSKGAVASGHLQESATSVQTALLNRLERIFEACF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EAWQSHRTDENIDTPGTPKTHSVPSATSKGAVASGHLQESATSVQTALLNRLERIFEACF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 PSILVPDAEEEVTSLKHLLETSTLPIKTREALPESGELLDVWTELQDIHDAHGLRYQWGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PSILVPDAEEEVTSLKHLLETSTLPIKTREALPESGELLDVWTELQDIHDAHGLRYQWGG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 SHSNKKLLSSLGIDTRNILFTGNKKQPVIVPMYAAGLGMLEPTKEPLKPLSAAEKIASIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SHSNKKLLSSLGIDTRNILFTGNKKQPVIVPMYAAGLGMLEPTKEPLKPLSAAEKIASIG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 QTATMSPDMNTCTSDQFQESLPPVQFDWSSSGLTNPLDASGGSTLLNLDFFGPVDDSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QTATMSPDMNTCTSDQFQESLPPVQFDWSSSGLTNPLDASGGSTLLNLDFFGPVDDSSSS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB8 SSTTIPGVDPELYELTTSKLEISTSSLKVTDAFARLMSTVEKTSTSTSRKPKREEHLSEE
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS46 SSTTIPGVDPELYELTTSKLEISTSSLKVTDAFARLMSTVEKTSTST-RKPKREEHLSEE
850 860 870 880 890
910 920 930
pF1KB8 AIKVIAGLPDLTFMHAKVLMFPATLTPSTSSQEKADG
:::::::::::::::::::::::::::::::::::::
CCDS46 AIKVIAGLPDLTFMHAKVLMFPATLTPSTSSQEKADG
900 910 920 930
>>CCDS1878.1 AFTPH gene_id:54812|Hs108|chr2 (909 aa)
initn: 5449 init1: 5449 opt: 5449 Z-score: 5747.6 bits: 1074.8 E(32554): 0
Smith-Waterman score: 5937; 97.0% identity (97.0% similar) in 937 aa overlap (1-937:1-909)
10 20 30 40 50 60
pF1KB8 MEPDIIRMYSSSPPPLDNGAEDDDDDEFGEFGGFSEVSPSGVGFVDFDTPDYTRPKEEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MEPDIIRMYSSSPPPLDNGAEDDDDDEFGEFGGFSEVSPSGVGFVDFDTPDYTRPKEEFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PSNHFMPIHEFSENVDSLTSFKSIKNGNDKDITAELSAPVKGQSDVLLSTTSKEIISSEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PSNHFMPIHEFSENVDSLTSFKSIKNGNDKDITAELSAPVKGQSDVLLSTTSKEIISSEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LATSIDGMERPGNLNKVVEQRQNVGTLESFSPGDFRTNMNVVHQNKQLESCNGEKPPCLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LATSIDGMERPGNLNKVVEQRQNVGTLESFSPGDFRTNMNVVHQNKQLESCNGEKPPCLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ILTNGFAVLETVNPQGTDDLDNVADSKGRKPLSTHSTEYNLDSVPSPAEEFADFATFSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ILTNGFAVLETVNPQGTDDLDNVADSKGRKPLSTHSTEYNLDSVPSPAEEFADFATFSKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ERIQLEEIECAVLNDREALTIRENNKINRVNELNSVKEVALGRSLDNKGDTDGEDQVCVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ERIQLEEIECAVLNDREALTIRENNKINRVNELNSVKEVALGRSLDNKGDTDGEDQVCVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 EISIVTNRGFSVEKQGLPTLQQDEFLQSGVQSKAWSLVDSADNSEAIRREQCKTEEKLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 EISIVTNRGFSVEKQGLPTLQQDEFLQSGVQSKAWSLVDSADNSEAIRREQCKTEEKLDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 LTSKCAHLCMDSVKTSDDEVGSPKEESRKFTNFQSPNIDPTEENDLDDSLSVKNGDSSND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LTSKCAHLCMDSVKTSDDEVGSPKEESRKFTNFQSPNIDPTEENDLDDSLSVKNGDSSND
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 FVTCNDINEDDFGDFGDFGSASGSTPPFVTGTQDSMSDATFEESSEHFPHFSEPGDDFGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 FVTCNDINEDDFGDFGDFGSASGSTPPFVTGTQDSMSDATFEESSEHFPHFSEPGDDFGE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 FGDINAVSCQEETILTKSDLKQTSDNLSEECQLARKSSGTGTEPVAKLKNGQEGEIGHFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 FGDINAVSCQEETILTKSDLKQTSDNLSEECQLARKSSGTGTEPVAKLKNGQEGEIGHFD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 SVPNIQDDCNGFQDSDDFADFSSAGPSQVVDWNAFEDEQKDSCSWAAFGDQQATESHHRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SVPNIQDDCNGFQDSDDFADFSSAGPSQVVDWNAFEDEQKDSCSWAAFGDQQATESHHRK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 EAWQSHRTDENIDTPGTPKTHSVPSATSKGAVASGHLQESATSVQTALLNRLERIFEACF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 EAWQSHRTDENIDTPGTPKTHSVPSATSKGAVASGHLQESATSVQTALLNRLERIFEACF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 PSILVPDAEEEVTSLKHLLETSTLPIKTREALPESGELLDVWTELQDIHDAHGLRYQWGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PSILVPDAEEEVTSLKHLLETSTLPIKTREALPESGELLDVWTELQDIHDAHGLRYQWGG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 SHSNKKLLSSLGIDTRNILFTGNKKQPVIVPMYAAGLGMLEPTKEPLKPLSAAEKIASIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SHSNKKLLSSLGIDTRNILFTGNKKQPVIVPMYAAGLGMLEPTKEPLKPLSAAEKIASIG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 QTATMSPDMNTCTSDQFQESLPPVQFDWSSSGLTNPLDASGGSTLLNLDFFGPVDDSSSS
::::::::::::::::::::::::::::::::::::::
CCDS18 QTATMSPDMNTCTSDQFQESLPPVQFDWSSSGLTNPLD----------------------
790 800 810
850 860 870 880 890 900
pF1KB8 SSTTIPGVDPELYELTTSKLEISTSSLKVTDAFARLMSTVEKTSTSTSRKPKREEHLSEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ------GVDPELYELTTSKLEISTSSLKVTDAFARLMSTVEKTSTSTSRKPKREEHLSEE
820 830 840 850 860 870
910 920 930
pF1KB8 AIKVIAGLPDLTFMHAKVLMFPATLTPSTSSQEKADG
:::::::::::::::::::::::::::::::::::::
CCDS18 AIKVIAGLPDLTFMHAKVLMFPATLTPSTSSQEKADG
880 890 900
937 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:03:30 2016 done: Sat Nov 5 16:03:31 2016
Total Scan time: 4.510 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]