Result of FASTA (ccds) for
pF1KB8461
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8461, 192 aa
1>>>pF1KB8461 192 - 192 aa - 192 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6633+/-0.000834; mu= 16.6513+/- 0.051
mean_var=71.6668+/-14.165, 0's: 0 Z-trim(108.9): 173 B-trim: 347 in 1/50
Lambda= 0.151501
statistics sampled from 10332 (10533) to 10332 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.324), width: 16
Scan time: 2.000
The best scores are: opt bits E(32554)
CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 ( 192) 1290 290.6 4e-79
CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 ( 192) 1211 273.3 6.3e-74
CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 ( 192) 1185 267.6 3.3e-72
CCDS222.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 925 210.8 4.1e-55
CCDS221.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 916 208.8 1.6e-54
CCDS7748.1 RHOG gene_id:391|Hs108|chr11 ( 191) 913 208.2 2.6e-54
CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 ( 205) 802 184.0 5.4e-47
CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 ( 214) 766 176.1 1.3e-44
CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 ( 211) 719 165.8 1.6e-41
CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 ( 258) 710 163.9 7.2e-41
CCDS854.1 RHOC gene_id:389|Hs108|chr1 ( 193) 702 162.1 2e-40
CCDS2795.1 RHOA gene_id:387|Hs108|chr3 ( 193) 700 161.6 2.7e-40
CCDS10068.1 RHOV gene_id:171177|Hs108|chr15 ( 236) 690 159.5 1.4e-39
CCDS1699.1 RHOB gene_id:388|Hs108|chr2 ( 196) 684 158.1 3e-39
CCDS9222.1 RHOF gene_id:54509|Hs108|chr12 ( 211) 650 150.7 5.5e-37
CCDS8155.1 RHOD gene_id:29984|Hs108|chr11 ( 210) 635 147.5 5.3e-36
CCDS82775.1 RHOA gene_id:387|Hs108|chr3 ( 187) 587 136.9 7.1e-33
CCDS11452.1 RND2 gene_id:8153|Hs108|chr17 ( 227) 559 130.9 5.6e-31
CCDS2190.1 RND3 gene_id:390|Hs108|chr2 ( 244) 543 127.4 6.7e-30
CCDS3458.1 RHOH gene_id:399|Hs108|chr4 ( 191) 523 122.9 1.2e-28
CCDS8771.1 RND1 gene_id:27289|Hs108|chr12 ( 232) 495 116.9 9.3e-27
CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10 ( 696) 352 86.1 5.2e-17
CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 727) 351 85.9 6.2e-17
CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 734) 351 85.9 6.3e-17
CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 749) 351 85.9 6.4e-17
CCDS73330.1 RHOD gene_id:29984|Hs108|chr11 ( 144) 266 66.7 7.8e-12
CCDS14632.1 RAP2C gene_id:57826|Hs108|chrX ( 183) 263 66.1 1.5e-11
CCDS9485.1 RAP2A gene_id:5911|Hs108|chr13 ( 183) 263 66.1 1.5e-11
CCDS1123.1 RIT1 gene_id:6016|Hs108|chr1 ( 219) 263 66.2 1.6e-11
CCDS58037.1 RIT1 gene_id:6016|Hs108|chr1 ( 236) 263 66.2 1.7e-11
CCDS3170.1 RAP2B gene_id:5912|Hs108|chr3 ( 183) 260 65.4 2.3e-11
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 257 64.8 3.8e-11
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 255 64.5 6.2e-11
CCDS9271.1 RAN gene_id:5901|Hs108|chr12 ( 216) 252 63.8 8.6e-11
>>CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 (192 aa)
initn: 1290 init1: 1290 opt: 1290 Z-score: 1534.0 bits: 290.6 E(32554): 4e-79
Smith-Waterman score: 1290; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
130 140 150 160 170 180
190
pF1KB8 PTRQQKRACSLL
::::::::::::
CCDS13 PTRQQKRACSLL
190
>>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 (192 aa)
initn: 1211 init1: 1211 opt: 1211 Z-score: 1440.7 bits: 273.3 E(32554): 6.3e-74
Smith-Waterman score: 1211; 92.2% identity (97.9% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
:::::::::::::::::::::::::::::.:::::::.::::::::.:::::::::::::
CCDS53 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
::::::::::::::.:::::::::.:::: .::::::::::::::::::::::::::::
CCDS53 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB8 PTRQQKRACSLL
:....:: : ::
CCDS53 PVKKRKRKCLLL
190
>>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 (192 aa)
initn: 1220 init1: 1185 opt: 1185 Z-score: 1409.9 bits: 267.6 E(32554): 3.3e-72
Smith-Waterman score: 1185; 88.5% identity (96.9% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS11 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
:::::::::::::::::::::::::::::.:::::::.:::::::: :::.:::::::::
CCDS11 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
:::::::.:..:::::::::::::.:.:: :::::::::::::::::::::::::::::
CCDS11 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB8 PTRQQKRACSLL
:... . :...
CCDS11 PVKKPGKKCTVF
190
>>CCDS222.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 954 init1: 919 opt: 925 Z-score: 1102.9 bits: 210.8 E(32554): 4.1e-55
Smith-Waterman score: 925; 69.3% identity (87.5% similar) in 192 aa overlap (1-192:1-191)
10 20 30 40 50 60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
::.::::::::::::::::::::::: ::.::.:::::::...::. ..: .:::.::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
:::::::::::::::::::.:::.:::.:.:::. :: ::. ::::.::..::::..:::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
:: .::::: ..: ::: . ::... .:::.:::::::::::.:::::: :.: :
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEP-
130 140 150 160 170
190
pF1KB8 PTRQQKRACSLL
: : :: : ..
CCDS22 PETQPKRKCCIF
180 190
>>CCDS221.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 939 init1: 904 opt: 916 Z-score: 1092.2 bits: 208.8 E(32554): 1.6e-54
Smith-Waterman score: 916; 68.8% identity (88.0% similar) in 192 aa overlap (1-192:1-191)
10 20 30 40 50 60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
::.::::::::::::::::::::::: ::.::.:::::::...::. ..: .:::.::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
:::::::::::::::::::.:::.:::.:.:::. :: ::. ::::.::..::::..:::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
:: .::::: ..: ::: . ::... .:::.:::::::.:::.:::::: :.: :
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-
130 140 150 160 170
190
pF1KB8 PTRQQKRACSLL
: ...: : ::
CCDS22 PEPKKSRRCVLL
180 190
>>CCDS7748.1 RHOG gene_id:391|Hs108|chr11 (191 aa)
initn: 941 init1: 900 opt: 913 Z-score: 1088.7 bits: 208.2 E(32554): 2.6e-54
Smith-Waterman score: 913; 71.4% identity (84.9% similar) in 192 aa overlap (1-192:1-191)
10 20 30 40 50 60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. ::.. :::.::::::
CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
::.::::: ::::::.::.::::..:: :::::: :: ::: ::::..::.::::: :::
CCDS77 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
. ::...:::. :::: :: ::::.: .:.::::::: : :.: :: ::.:::: :
CCDS77 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
130 140 150 160 170 180
190
pF1KB8 PTRQQKRACSLL
: .. :.: ::
CCDS77 PIKRG-RSCILL
190
>>CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 (205 aa)
initn: 838 init1: 800 opt: 802 Z-score: 957.2 bits: 184.0 E(32554): 5.4e-47
Smith-Waterman score: 802; 62.0% identity (83.4% similar) in 187 aa overlap (4-190:10-196)
10 20 30 40 50
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLG
.::::::::::::::::.::...::: ::.:::::.:...: : .: ::
CCDS33 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVG
:.:::::::::::::::::.:::::::::.:.:::..::. .: ::.... :..:..:.:
CCDS33 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIR
:..::::: :. .:.. : :: :: ::::: . :.:::::::.::::::::::
CCDS33 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII
130 140 150 160 170 180
180 190
pF1KB8 AVLCPQPTRQQKRACSLL
:.: :. .:: :
CCDS33 AILTPKKHTVKKRIGSRCINCCLIT
190 200
>>CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 (214 aa)
initn: 793 init1: 753 opt: 766 Z-score: 914.4 bits: 176.1 E(32554): 1.3e-44
Smith-Waterman score: 766; 59.3% identity (82.0% similar) in 189 aa overlap (2-190:20-205)
10 20 30 40
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA
. .::::::::::::::::.::...::: ::.:::::.:..
CCDS97 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR
.: : .: :::.::::::::..:::::::.:::::::::.:.::::.::. .: ::..
CCDS97 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 HHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ
: .: .:.::..::::: :. .: : :.:: .:. ::: : . :::::::::
CCDS97 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
130 140 150 160 170 180
170 180 190
pF1KB8 RGLKTVFDEAIRAVLCPQPTRQQKRACSLL
.:::.:::::: ... : ...:. ::
CCDS97 KGLKAVFDEAILTIFHP---KKKKKRCSEGHSCCSII
190 200 210
>>CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 (211 aa)
initn: 713 init1: 713 opt: 719 Z-score: 859.0 bits: 165.8 E(32554): 1.6e-41
Smith-Waterman score: 1163; 83.9% identity (89.1% similar) in 211 aa overlap (1-192:1-211)
10 20 30 40 50 60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100
pF1KB8 QEDYDRLRPLSYPQT-------------------DVFLICFSLVSPASYENVRAKWFPEV
::::::::::::::: ::::::::::::::.:::::::.:::
CCDS53 QEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 RHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALT
:::::.:::::::::::::::::::::::::::.:::::::::.:::: .::::::::::
CCDS53 RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT
130 140 150 160 170 180
170 180 190
pF1KB8 QRGLKTVFDEAIRAVLCPQPTRQQKRACSLL
:::::::::::::::::: :....:: : ::
CCDS53 QRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL
190 200 210
>>CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 (258 aa)
initn: 723 init1: 705 opt: 710 Z-score: 847.2 bits: 163.9 E(32554): 7.2e-41
Smith-Waterman score: 710; 55.9% identity (80.1% similar) in 186 aa overlap (2-187:48-233)
10 20 30
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGE
...:::.::::::::: :..:::::..: :
CCDS15 PVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB8 YIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE
::::.:::.:: : ::..:: : : :::::...:.:::: : .::.::.:::.:::.:..
CCDS15 YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB8 NVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDS
:: :: ::.: :::..:::::::. :::.: .. .: . : :. . :.:: .
CCDS15 NVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKA
140 150 160 170 180 190
160 170 180 190
pF1KB8 VKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRACSLL
..:.:::::::..:: ::: :: : . . :.:: .
CCDS15 ASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCF
200 210 220 230 240 250
CCDS15 V
192 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:08:10 2016 done: Fri Nov 4 13:08:11 2016
Total Scan time: 2.000 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]