Result of FASTA (ccds) for
pF1KB8445
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8445, 301 aa
1>>>pF1KB8445 301 - 301 aa - 301 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3293+/-0.000704; mu= 15.9314+/- 0.043
mean_var=70.5959+/-14.084, 0's: 0 Z-trim(110.2): 13 B-trim: 0 in 0/52
Lambda= 0.152646
statistics sampled from 11413 (11420) to 11413 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.351), width: 16
Scan time: 2.600
The best scores are: opt bits E(32554)
CCDS33658.1 CYB5R3 gene_id:1727|Hs108|chr22 ( 301) 2075 465.6 2.1e-131
CCDS54535.1 CYB5R3 gene_id:1727|Hs108|chr22 ( 334) 2033 456.3 1.4e-128
CCDS14040.1 CYB5R3 gene_id:1727|Hs108|chr22 ( 278) 1919 431.2 4.3e-121
CCDS1431.1 CYB5R1 gene_id:51706|Hs108|chr1 ( 305) 1272 288.7 3.6e-78
CCDS7780.1 CYB5R2 gene_id:51700|Hs108|chr11 ( 276) 1174 267.1 1e-71
>>CCDS33658.1 CYB5R3 gene_id:1727|Hs108|chr22 (301 aa)
initn: 2075 init1: 2075 opt: 2075 Z-score: 2472.6 bits: 465.6 E(32554): 2.1e-131
Smith-Waterman score: 2075; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KB8 MGAQLSTLGHMVLFPVWFLYSLLMKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGAQLSTLGHMVLFPVWFLYSLLMKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV
250 260 270 280 290 300
pF1KB8 F
:
CCDS33 F
>>CCDS54535.1 CYB5R3 gene_id:1727|Hs108|chr22 (334 aa)
initn: 2033 init1: 2033 opt: 2033 Z-score: 2422.0 bits: 456.3 E(32554): 1.4e-128
Smith-Waterman score: 2033; 100.0% identity (100.0% similar) in 294 aa overlap (8-301:41-334)
10 20 30
pF1KB8 MGAQLSTLGHMVLFPVWFLYSLLMKLFQRSTPAITLE
::::::::::::::::::::::::::::::
CCDS54 QSKDIWGREESICERLKQDGLDVERAESWELGHMVLFPVWFLYSLLMKLFQRSTPAITLE
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB8 SPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPI
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB8 SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKF
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB8 AIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIL
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB8 LRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPP
260 270 280 290 300 310
280 290 300
pF1KB8 PMIQYACLPNLDHVGHPTERCFVF
::::::::::::::::::::::::
CCDS54 PMIQYACLPNLDHVGHPTERCFVF
320 330
>>CCDS14040.1 CYB5R3 gene_id:1727|Hs108|chr22 (278 aa)
initn: 1919 init1: 1919 opt: 1919 Z-score: 2287.5 bits: 431.2 E(32554): 4.3e-121
Smith-Waterman score: 1919; 100.0% identity (100.0% similar) in 278 aa overlap (24-301:1-278)
10 20 30 40 50 60
pF1KB8 MGAQLSTLGHMVLFPVWFLYSLLMKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRF
:::::::::::::::::::::::::::::::::::::
CCDS14 MKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRF
10 20 30
70 80 90 100 110 120
pF1KB8 RFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 FPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAG
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 RAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV
220 230 240 250 260 270
pF1KB8 F
:
CCDS14 F
>>CCDS1431.1 CYB5R1 gene_id:51706|Hs108|chr1 (305 aa)
initn: 1296 init1: 1250 opt: 1272 Z-score: 1516.8 bits: 288.7 E(32554): 3.6e-78
Smith-Waterman score: 1272; 63.5% identity (85.9% similar) in 277 aa overlap (26-301:29-305)
10 20 30 40 50
pF1KB8 MGAQLSTLGHMVLFPVWFLYSLLMKLFQRST-PAITLESPDIKYPLRLIDREIISHD
: .:: : .:: .:. :: :::.:. .::.
CCDS14 MGIQTSPVLLASLGVGLVTLLGLAVGSYLVRRSRRPQVTLLDPNEKYLLRLLDKTTVSHN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 TRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKD
:.:::::::. .: ::::::.:::::.::::.::.:::::..::.:.:.::::::::.:
CCDS14 TKRFRFALPTAHHTLGLPVGKHIYLSTRIDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 THPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVG
.::::: ::::::::.:...::..:::::::::.: :::.: :.:.::: : :..:..:
CCDS14 VHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 MIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLW
:::::::::::::.::::.: :.: : : :::::::::::.:: .::::. .. :::::
CCDS14 MIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDIILREDLEELQARYPNRFKLW
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 YTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTE
.:::. :. : :..:::. .:::.::: : .. :::.::::::.: :: ::::..:. .
CCDS14 FTLDHPPKDWAYSKGFVTADMIREHLPAPGDDVLVLLCGPPPMVQLACHPNLDKLGYSQK
250 260 270 280 290 300
300
pF1KB8 RCFVF
:..
CCDS14 MRFTY
>>CCDS7780.1 CYB5R2 gene_id:51700|Hs108|chr11 (276 aa)
initn: 1216 init1: 1170 opt: 1174 Z-score: 1400.8 bits: 267.1 E(32554): 1e-71
Smith-Waterman score: 1174; 59.9% identity (82.8% similar) in 274 aa overlap (28-301:4-276)
10 20 30 40 50 60
pF1KB8 MGAQLSTLGHMVLFPVWFLYSLLMKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRF
.: : :::..:. :::: ::..: :::.::::
CCDS77 MNSRRREP-ITLQDPEAKYPLPLIEKEKISHNTRRF
10 20 30
70 80 90 100 110 120
pF1KB8 RFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPK
::.::::.:.::::::... : :.::..:::: :::.:::::.:::::.::.:::..::.
CCDS77 RFGLPSPDHVLGLPVGNYVQLLAKIDNELVVRAYTPVSSDDDRGFVDLIIKIYFKNVHPQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 FPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAG
.: ::::.::::.:.::.:: :::: : : :.: :...::::. :.: . .:::::
CCDS77 YPEGGKMTQYLENMKIGETIFFRGPRGRLFYHGPGNLGIRPDQTSEPKKTLADHLGMIAG
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLD
:::::::::.:: : :::.:.: :.::::::.:::.: ::::. : .:.::::::
CCDS77 GTGITPMLQLIRHITKDPSDRTRMSLIFANQTEEDILVRKELEEIARTHPDQFNLWYTLD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 RAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV
: : .: :..:::. .::..::::: . :.:.:::::.:: : :::...:. . :.
CCDS77 RPPIGWKYSSGFVTADMIKEHLPPPAKSTLILVCGPPPLIQTAAHPNLEKLGYTQDMIFT
220 230 240 250 260 270
pF1KB8 F
.
CCDS77 Y
301 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:56:45 2016 done: Fri Nov 4 12:56:46 2016
Total Scan time: 2.600 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]