FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8442, 126 aa
  1>>>pF1KB8442 126 - 126 aa - 126 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7639+/-0.000263; mu= 9.4243+/- 0.017
 mean_var=83.3738+/-16.297, 0's: 0 Z-trim(120.2): 3  B-trim: 0 in 0/57
 Lambda= 0.140462
 statistics sampled from 35236 (35239) to 35236 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.413), width:  16
 Scan time:  5.410

The best scores are:                                      opt bits E(85289)
NP_056188 (OMIM: 607757) protein chibby homolog 1  ( 126)  809 172.4 1.7e-43
NP_001002880 (OMIM: 607757) protein chibby homolog ( 169)  809 172.5 2.1e-43


>>NP_056188 (OMIM: 607757) protein chibby homolog 1 isof  (126 aa)
 initn: 809 init1: 809 opt: 809  Z-score: 902.0  bits: 172.4 E(85289): 1.7e-43
Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KB8 MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR
               70        80        90       100       110       120

             
pF1KB8 ISRKRK
       ::::::
NP_056 ISRKRK
             

>>NP_001002880 (OMIM: 607757) protein chibby homolog 1 i  (169 aa)
 initn: 809 init1: 809 opt: 809  Z-score: 900.2  bits: 172.5 E(85289): 2.1e-43
Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:44-169)

                                             10        20        30
pF1KB8                               MPFFGNTFSPKKTPPRKSASLSNLHSLDRS
                                     ::::::::::::::::::::::::::::::
NP_001 PDANEDSLCNSVHVQWPGEGSTGFAFIRPKMPFFGNTFSPKKTPPRKSASLSNLHSLDRS
            20        30        40        50        60        70   

               40        50        60        70        80        90
pF1KB8 TREVELGLEYGSPTMNLAGQSLKFENGQWIAETGVSGGVDRREVQRLRRRNQQLEEENNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TREVELGLEYGSPTMNLAGQSLKFENGQWIAETGVSGGVDRREVQRLRRRNQQLEEENNL
            80        90       100       110       120       130   

              100       110       120      
pF1KB8 LRLKVDILLDMLSESTAESHLMEKELDELRISRKRK
       ::::::::::::::::::::::::::::::::::::
NP_001 LRLKVDILLDMLSESTAESHLMEKELDELRISRKRK
           140       150       160         




126 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:55:42 2016 done: Fri Nov  4 12:55:43 2016
 Total Scan time:  5.410 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]