Result of FASTA (ccds) for
pF1KB8434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8434, 138 aa
1>>>pF1KB8434 138 - 138 aa - 138 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8148+/-0.000738; mu= 8.5649+/- 0.044
mean_var=90.2588+/-18.818, 0's: 0 Z-trim(110.6): 133 B-trim: 243 in 2/49
Lambda= 0.134999
statistics sampled from 11556 (11738) to 11556 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.361), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS6512.1 CDKN2B gene_id:1030|Hs108|chr9 ( 138) 905 185.5 8.7e-48
CCDS6510.1 CDKN2A gene_id:1029|Hs108|chr9 ( 156) 682 142.1 1.1e-34
CCDS56565.1 CDKN2A gene_id:1029|Hs108|chr9 ( 167) 682 142.2 1.2e-34
CCDS6513.1 CDKN2B gene_id:1030|Hs108|chr9 ( 78) 344 76.1 4.3e-15
CCDS12244.1 CDKN2D gene_id:1032|Hs108|chr19 ( 166) 333 74.2 3.5e-14
CCDS555.1 CDKN2C gene_id:1031|Hs108|chr1 ( 168) 289 65.6 1.3e-11
>>CCDS6512.1 CDKN2B gene_id:1030|Hs108|chr9 (138 aa)
initn: 905 init1: 905 opt: 905 Z-score: 971.4 bits: 185.5 E(32554): 8.7e-48
Smith-Waterman score: 905; 99.3% identity (99.3% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB8 MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQVMMMDSAR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS65 MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQVMMMGSAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA
70 80 90 100 110 120
130
pF1KB8 EERGHRDVAGYLRTATGD
::::::::::::::::::
CCDS65 EERGHRDVAGYLRTATGD
130
>>CCDS6510.1 CDKN2A gene_id:1029|Hs108|chr9 (156 aa)
initn: 737 init1: 676 opt: 682 Z-score: 735.9 bits: 142.1 E(32554): 1.1e-34
Smith-Waterman score: 682; 82.0% identity (88.7% similar) in 133 aa overlap (9-137:3-135)
10 20 30 40 50
pF1KB8 MREENKGMPSGGGSDEG----LASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQVMMM
:..:.: : ::.::::: ::.:: :::::: ::. : .::: ::::::
CCDS65 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 DSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP
60 70 80 90 100 110
120 130
pF1KB8 VDLAEERGHRDVAGYLRTATGD
:::::: :::::: :::.:.:
CCDS65 VDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD
120 130 140 150
>>CCDS56565.1 CDKN2A gene_id:1029|Hs108|chr9 (167 aa)
initn: 737 init1: 676 opt: 682 Z-score: 735.5 bits: 142.2 E(32554): 1.2e-34
Smith-Waterman score: 682; 82.0% identity (88.7% similar) in 133 aa overlap (9-137:3-135)
10 20 30 40 50
pF1KB8 MREENKGMPSGGGSDEG----LASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQVMMM
:..:.: : ::.::::: ::.:: :::::: ::. : .::: ::::::
CCDS56 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 DSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP
60 70 80 90 100 110
120 130
pF1KB8 VDLAEERGHRDVAGYLRTATGD
:::::: :::::: :::.:.:
CCDS56 VDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSEMIGNHLWVCRSRHA
120 130 140 150 160
>>CCDS6513.1 CDKN2B gene_id:1030|Hs108|chr9 (78 aa)
initn: 387 init1: 344 opt: 344 Z-score: 384.4 bits: 76.1 E(32554): 4.3e-15
Smith-Waterman score: 344; 100.0% identity (100.0% similar) in 53 aa overlap (1-53:1-53)
10 20 30 40 50 60
pF1KB8 MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQVMMMDSAR
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQVAGAPGPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA
CCDS65 RQGARERGARPRRIGAGT
70
>>CCDS12244.1 CDKN2D gene_id:1032|Hs108|chr19 (166 aa)
initn: 363 init1: 208 opt: 333 Z-score: 368.2 bits: 74.2 E(32554): 3.5e-14
Smith-Waterman score: 333; 50.9% identity (75.0% similar) in 116 aa overlap (18-132:12-126)
10 20 30 40 50
pF1KB8 MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAG-ADPNGVNRFGRRAIQVMMMDSA
:..::::: :..::.::. . :...::::. :.::::. :.
CCDS12 MLLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL
.: :: .:: :: : .. : ::::::: :::::: :: . :: ..: :. : ::. :
CCDS12 AIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL
60 70 80 90 100 110
120 130
pF1KB8 AEERGHRDVAGYLRTATGD
: ..:: :...:
CCDS12 AVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL
120 130 140 150 160
>>CCDS555.1 CDKN2C gene_id:1031|Hs108|chr1 (168 aa)
initn: 301 init1: 167 opt: 289 Z-score: 321.8 bits: 65.6 E(32554): 1.3e-11
Smith-Waterman score: 289; 44.3% identity (73.0% similar) in 115 aa overlap (18-132:9-122)
10 20 30 40 50 60
pF1KB8 MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQVMMMDSAR
:::::::: .:.. .::. ... :. : ::: :.::: . . .
CCDS55 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA
.:. :::.::.:. : . .. .::::: :::::: .: . : ....: : ::. ::
CCDS55 IARRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA
60 70 80 90 100 110
130
pF1KB8 EERGHRDVAGYLRTATGD
..:: :. .:
CCDS55 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
120 130 140 150 160
138 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:32:50 2016 done: Sat Nov 5 01:32:50 2016
Total Scan time: 1.720 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]