Result of FASTA (ccds) for
pF1KB8411
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8411, 866 aa
1>>>pF1KB8411 866 - 866 aa - 866 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2298+/-0.000902; mu= 5.3560+/- 0.055
mean_var=238.5945+/-48.196, 0's: 0 Z-trim(114.4): 16 B-trim: 0 in 0/54
Lambda= 0.083032
statistics sampled from 14937 (14950) to 14937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.459), width: 16
Scan time: 4.950
The best scores are: opt bits E(32554)
CCDS34595.1 RNF216 gene_id:54476|Hs108|chr7 ( 866) 6077 741.3 1.7e-213
CCDS34594.1 RNF216 gene_id:54476|Hs108|chr7 ( 923) 5614 685.9 8.9e-197
>>CCDS34595.1 RNF216 gene_id:54476|Hs108|chr7 (866 aa)
initn: 6077 init1: 6077 opt: 6077 Z-score: 3946.4 bits: 741.3 E(32554): 1.7e-213
Smith-Waterman score: 6077; 100.0% identity (100.0% similar) in 866 aa overlap (1-866:1-866)
10 20 30 40 50 60
pF1KB8 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDVILTEDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DDVILTEDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VIILEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VIILEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LNQQPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LNQQPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EFEDQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EFEDQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 GFIEEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GFIEEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 FYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKEC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 LIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 ELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 TSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 GAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 VEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVN
790 800 810 820 830 840
850 860
pF1KB8 YDFGPIHMPLEHNLPMHFGPQPRHRF
::::::::::::::::::::::::::
CCDS34 YDFGPIHMPLEHNLPMHFGPQPRHRF
850 860
>>CCDS34594.1 RNF216 gene_id:54476|Hs108|chr7 (923 aa)
initn: 5614 init1: 5614 opt: 5614 Z-score: 3646.3 bits: 685.9 E(32554): 8.9e-197
Smith-Waterman score: 5765; 93.7% identity (93.7% similar) in 898 aa overlap (26-866:26-923)
10 20 30 40 50 60
pF1KB8 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
:::::::::::::::::::::::::::::::::::
CCDS34 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
10 20 30 40 50 60
pF1KB8 DDVILTE-----------------------------------------------------
:::::::
CCDS34 DDVILTETNKPQRSRPNLIKPAAQWQDLKRLGEERPKKSRAAFESDKSSYFSVCNNPLFD
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB8 ----DDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGAQDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB8 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB8 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB8 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB8 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
370 380 390 400 410 420
370 380 390 400 410 420
pF1KB8 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
430 440 450 460 470 480
430 440 450 460 470 480
pF1KB8 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
490 500 510 520 530 540
490 500 510 520 530 540
pF1KB8 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
550 560 570 580 590 600
550 560 570 580 590 600
pF1KB8 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
610 620 630 640 650 660
610 620 630 640 650 660
pF1KB8 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSI
670 680 690 700 710 720
670 680 690 700 710 720
pF1KB8 EEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAP
730 740 750 760 770 780
730 740 750 760 770 780
pF1KB8 CQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQRVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQRVEA
790 800 810 820 830 840
790 800 810 820 830 840
pF1KB8 LPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVNYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVNYDF
850 860 870 880 890 900
850 860
pF1KB8 GPIHMPLEHNLPMHFGPQPRHRF
:::::::::::::::::::::::
CCDS34 GPIHMPLEHNLPMHFGPQPRHRF
910 920
866 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:42:52 2016 done: Fri Nov 4 12:42:53 2016
Total Scan time: 4.950 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]